PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g090950.2.1
Common NameLOC104648977
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 770aa    MW: 83490.3 Da    PI: 5.7217
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g090950.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.13.9e-1044097682374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         +++L+++Ae v++g+  laq +Larl+++ sp g+p+ R+a+y +eAL+  l+ ++++l  ++++s+ s    + ++ a+k fse+sP+ +
  Solyc01g090950.2.1 409 IDQLFKAAELVQTGNPVLAQGILARLNHQLSPIGKPFYRAAFYCKEALQLLLHANTNNLNPSMASSPFS---LIFKIGAYKSFSEISPVAQ 496
                         689***************************************************999999888888888...******************* PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         f+++t+Nqa+le ++g er+Hi+Dfdi++G+QW++L+q+La R++g+p+l+iT+++sp+++++ el  t+e+L +fA+e+++ fef++l  
  Solyc01g090950.2.1 497 FANFTCNQALLEVLDGFERIHIVDFDIGYGGQWASLMQELALRSGGAPTLKITALASPSTHDQLELGLTRENLIHFASEINMAFEFEILSI 587
                         ****************************************************************************************977 PP

                GRAS 184 krledleleeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         ++l++   ++L   v+++Ea+aVnl ++  + +  ++sl+     vL++vk+lsP++vv v++ +d+++ +F +++++al+ ys l++sl+
  Solyc01g090950.2.1 588 DSLNST-SWSLppLVSENEAIAVNLPVSSLSSY--QLSLPL----VLRFVKQLSPRIVVSVDRGCDRTDLPFPNHVIQALQSYSNLLESLD 671
                         766665.4555334788**********877776..555555....*********************************************6 PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         a    + ++ +k+Er+ll++ i+ +v+ + ++     e+ ++Wr+ + ++GF p++ls+++++qa++++++++++g++ve+++ slvl+W+
  Solyc01g090950.2.1 672 AV-NVNFDALQKIERFLLQPGIERIVMGRFRS----PEKTQHWRSLFLSSGFAPLSLSNFTESQAECVVKRTPVRGFHVEKRQSSLVLCWQ 757
                         65.3466999****************998877....9****************************************************** PP

                GRAS 364 drpLvsvSaWr 374
                         +++L+s+SaWr
  Solyc01g090950.2.1 758 RKELISASAWR 768
                         **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.416382748IPR005202Transcription factor GRAS
PfamPF035141.3E-101409768IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MKGMPLPFEF EGKGVLELDV LFNKDSILNS WSNHNTSKES SSCCYFVNSP SAVLDTIRSP  60
RPINSSSTLS SSLGGGGGGG GTASTDTAGG GVAAVSANPS SKWQQQQQDN TTATSSNVGA  120
ESELQQVQPP SSLEMGAAAT GGDKCAMEEW EGGLSESVMA SPCQEQSILR WIMGDVDDPS  180
MANLNKVLQV SGTGDYEFNG GFGVVDQGFG VDPVGQIGSF MPAISSSVSM SSSSFPTNRM  240
NSDKIGLVSN PPTNLPQNPI FPSLSNNLGP IAFGQTQQQP FESTDLKPHA FNSQFLINQH  300
QTQIPQNPSF LLPLPFAQQE QNLALPPQAK RHNPGTMGGL EPGSQISKGL FLDAGHQQPT  360
PSQGLAHQLQ LLPHFRPGAM GTKPKMVGEE MAQFHQLQQQ QQQQQQAIID QLFKAAELVQ  420
TGNPVLAQGI LARLNHQLSP IGKPFYRAAF YCKEALQLLL HANTNNLNPS MASSPFSLIF  480
KIGAYKSFSE ISPVAQFANF TCNQALLEVL DGFERIHIVD FDIGYGGQWA SLMQELALRS  540
GGAPTLKITA LASPSTHDQL ELGLTRENLI HFASEINMAF EFEILSIDSL NSTSWSLPPL  600
VSENEAIAVN LPVSSLSSYQ LSLPLVLRFV KQLSPRIVVS VDRGCDRTDL PFPNHVIQAL  660
QSYSNLLESL DAVNVNFDAL QKIERFLLQP GIERIVMGRF RSPEKTQHWR SLFLSSGFAP  720
LSLSNFTESQ AECVVKRTPV RGFHVEKRQS SLVLCWQRKE LISASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-354087684375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.57950.0fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g090950.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0145810.0Lycopersicon esculentum clone 134038R, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001333839.10.0GRAS family protein
TrEMBLA0A0V0IWJ20.0A0A0V0IWJ2_SOLCH; Putative scarecrow-like protein 22-like
STRINGSolyc01g090950.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62532235
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-145GRAS family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]