PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc01g090840.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 324aa MW: 36188.3 Da PI: 6.6476 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0016 | 7 | 27 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C++ F++ L H+r+H Solyc01g090840.2.1 7 CKLCSRKFPNGRALGGHMRSH 27 ********************9 PP | |||||||
2 | zf-C2H2 | 12 | 0.00065 | 182 | 204 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k F++ L H +H Solyc01g090840.2.1 182 YRCETCNKFFRSYQALGGHRASH 204 9***********99999998887 PP | |||||||
3 | zf-C2H2 | 12 | 0.00064 | 233 | 255 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++F++ L H r+H Solyc01g090840.2.1 233 HQCPVCYRVFPSGQALGGHKRSH 255 79******************999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.48 | 5 | 27 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.538 | 5 | 27 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.7E-7 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 7 | 27 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.05 | 182 | 204 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.5E-10 | 182 | 206 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.83E-8 | 182 | 255 | No hit | No description |
PROSITE profile | PS50157 | 10.118 | 182 | 209 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 184 | 204 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.091 | 233 | 255 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 7.2E-13 | 233 | 255 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.369 | 233 | 256 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 235 | 255 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 324 aa Download sequence Send to blast |
MEKHKICKLC SRKFPNGRAL GGHMRSHMMN LQLHQHETES IPSSSSWSDE EEEKGKILNS 60 SDVDADDSVV VLPDKESETE SSKNPIRFKR SKRVRKSRKP NFMKITEYYS SVVETEPVSS 120 ISENSPEEDV AHCLMMLSRD KWNKNEQVDF YSDEEFKEEN SAEDSGGEVK VTTKSSRGRG 180 KYRCETCNKF FRSYQALGGH RASHKKIKLS NEVIESAAHN NNNNNAVIEE KIHQCPVCYR 240 VFPSGQALGG HKRSHTIGAG VSTSVTVLPP PAPAKLELSR TGGTSLIDLN FPPPMEDDDE 300 IISQVEVSAV SDAEFVNTIN NQR* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc01g090840.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC234112 | 1e-07 | Solanum lycopersicum chromosome 12 clone LE_HBa-95O18, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010325535.1 | 0.0 | zinc finger protein ZAT9-like | ||||
TrEMBL | A0A3Q7EJY9 | 0.0 | A0A3Q7EJY9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g090840.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1095 | 24 | 80 | Representative plant | OGRP2404 | 10 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60580.1 | 1e-52 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc01g090840.2.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|