PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g090760.2.1
Common NameLOC101267350
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 261aa    MW: 29246 Da    PI: 6.8357
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g090760.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.8e-18167201135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Solyc01g090760.2.1 167 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 201
                         *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.9E-841252IPR016679Transcription factor, GATA, plant
SMARTSM004018.2E-16161211IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.503161197IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.8E-15162225No hitNo description
Gene3DG3DSA:3.30.50.108.0E-14165199IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.27E-14166213No hitNo description
PfamPF003206.9E-16167201IPR000679Zinc finger, GATA-type
PROSITE patternPS003440167192IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDVYGLHSAP DLFRIDDLLD FSNDEIFSIN NNSNNTDSNH HHQPHSHNSS AAGPANYYDA  60
LLPNSSDDFT DNLCVPSDDV AELEWLSNFV EDSFSNFPAN SVTGTMNITS NTASFHGRSR  120
SKRSRSTSSW TSSLQNSNAT TSVKNKESSV YTRERSSSMD EDVPRRCTHC ASEKTPQWRT  180
GPLGPKTLCN ACGVRYKSGR LVPEYRPAAS PTFVLTQHSN SHRKVMELRR QKEMIHQPQQ  240
QQQMPPSTEE GMYGHHFRVC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117122RSRSKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.240920.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in flowers and leaves, and to a lower extent in stems. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g090760.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0109406e-09Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0195L01, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229778.10.0GATA transcription factor 4
SwissprotO497412e-75GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A3Q7F4580.0A0A3Q7F458_SOLLC; GATA transcription factor
STRINGSolyc01g090760.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57761935
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.14e-66GATA transcription factor 4
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]