PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g090370.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 222aa    MW: 25554.5 Da    PI: 7.5657
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g090370.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-1877128155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++ykGVr+++ +g+++AeIrdp     k  r +lg++ t+e+Aa a+++ + +l+g
  Solyc01g090370.1.1  77 KKYKGVRRRP-WGKYAAEIRDP---ErKGCRLWLGTYETPEDAALAYDRTAFRLRG 128
                         59********.**********7...22349************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.87E-3277138No hitNo description
PROSITE profilePS5103223.76278136IPR001471AP2/ERF domain
PfamPF008476.6E-1378128IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2278137IPR016177DNA-binding domain
SMARTSM003802.6E-3578142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3078137IPR001471AP2/ERF domain
PRINTSPR003672.6E-127990IPR001471AP2/ERF domain
PRINTSPR003672.6E-12118138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MQGKISLDTE QNFLDTMQHL FNDSDFSQIL SEIQTPRQYS TTPDHQNAIA QDNIPILLQE  60
IEENKESTTR LSEHRPKKYK GVRRRPWGKY AAEIRDPERK GCRLWLGTYE TPEDAALAYD  120
RTAFRLRGSK AVLNFPHLIE TNVTEINRVR PRRRPRSPEF SSSSPPPPPP PPYVDESNNN  180
NTDGSISKRR NVELINSLAT VNNLDCQNIM EKYLTSDYYF A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2977136463ATERF1
3gcc_A6e-2977136463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149155RPRRRPR
2150156PRRRPRS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269|PubMed:11950980}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g090370.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010315446.11e-151ethylene-responsive transcription factor 13-like
SwissprotQ8L9K15e-40ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLM1CGJ51e-106M1CGJ5_SOLTU; Uncharacterized protein
STRINGSolyc01g090370.1.11e-164(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-39ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]