PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g087130.2.1
Common NameLOC101245096
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 353aa    MW: 39181.6 Da    PI: 6.1816
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g087130.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-152774148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEde+l  +  + G g+W+ Iar  g+ R++k+c++rw +yl
  Solyc01g087130.2.1 27 KGLWSPEEDEKLMSYMLRNGQGCWSDIARNAGLQRCGKSCRLRWINYL 74
                        678*******************************************97 PP

2Myb_DNA-binding49.97.2e-1680123146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++ +E+el+v+++  lG++ W+ Ia++++ gRt++++k++w++
  Solyc01g087130.2.1  80 RGAFSLQEEELIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 123
                         89********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5522274IPR017930Myb domain
SuperFamilySSF466895.08E-2825121IPR009057Homeodomain-like
SMARTSM007177.8E-112676IPR001005SANT/Myb domain
PfamPF002495.4E-142774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-232881IPR009057Homeodomain-like
CDDcd001671.30E-93074No hitNo description
PROSITE profilePS5129424.36975129IPR017930Myb domain
SMARTSM007175.9E-1579127IPR001005SANT/Myb domain
PfamPF002494.6E-1480123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2482128IPR009057Homeodomain-like
CDDcd001671.05E-1082122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MRKPEHNNTT MKEKEKEKVN KLGKLRKGLW SPEEDEKLMS YMLRNGQGCW SDIARNAGLQ  60
RCGKSCRLRW INYLRPDLKR GAFSLQEEEL IVHLHSILGN RWSQIAARLP GRTDNEIKNF  120
WNSTIKKRSK NNNNSTPSPN TSDSSIGGIF PMQGHDVNNV MATLCMDNSS STTSGSSMQA  180
MVPFNPFPQL DSTSYDISGL VGPVNLGQFG CSGGDGGFLD YGVVETYSMM GLGSDEFSIP  240
SLEGVHNKST TTMGESNNNS NVDFSSNNIV SGANDYDSMI EKKNNTNVNN NNNQHLMNMS  300
GISDQSLKVE DYMVGFGNHH HWHGESLRIG EFDWEGLLAN VSSLPYLDFQ VE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27251285107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g087130.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2395772e-09Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-247j1 map 10, complete sequence
GenBankX952962e-09L.esculentum mRNA for THM27 protein
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229624.10.0transcription factor MYB46-like
TrEMBLM1A9C00.0M1A9C0_SOLTU; Uncharacterized protein
STRINGSolyc01g087130.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.14e-62myb domain protein 46
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]