PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g086870.2.1
Common NameLOC101265165
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 408aa    MW: 45028 Da    PI: 5.5187
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g086870.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.4e-12335380655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L++l P+     +k  + a++L +Av+YIk+Lq
  Solyc01g086870.2.1 335 SIAERMRRTRISERMKKLQDLFPNM----DKQTNTADMLDLAVDYIKDLQ 380
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.57329379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-16332396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.72E-12333384No hitNo description
Gene3DG3DSA:4.10.280.103.7E-15334400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-13335385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-9335380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MFSSEPISRE MDKLNSFFFS GGGGGSSSFK NGEGMESEFF RSKEMMGSDF FQQQSQFQQS  60
NSGGLTRYRS APSSFFAGIL DGDGNNSGEN FITGDGSSSS DSDSMFTALL NNNDTTNNNG  120
TRDMNDQNQK NQLQFGTSLK QEIGEEIEFG NENGVQNRYE NGGVSYSVGV QMQTRANLSN  180
GNGDSDLIRQ NSSPAGFFNG FMREVGNFGA SVGTNREAST STNGFNNHIS YSTNQSSTSN  240
FMPSIAENES WNDASFNSLK RNRDGDLKMF STNFNGMTNQ NDESRNYTSS GLSHHLSLPK  300
TSSEMAAIEK YLQFQQDSVP CKIRAKRGCA THPRSIAERM RRTRISERMK KLQDLFPNMD  360
KQTNTADMLD LAVDYIKDLQ KQVQTLTDKK AKCSCTSKQL QYSNGTT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.103010.0callus| flower| fruit| leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g086870.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2200601e-66Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229606.10.0transcription factor bHLH130
TrEMBLA0A3Q7EIP20.0A0A3Q7EIP2_SOLLC; Uncharacterized protein
STRINGSolyc01g086870.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44352238
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-65bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]