PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g079560.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 110aa MW: 12725.4 Da PI: 4.9005 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.2 | 2.6e-12 | 26 | 104 | 16 | 99 |
EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 l++p + ++++ +++ + ++ l+ +g + W+++ r ++++++ +GWkeF+ +n+++ ++ F +dg ++f +v++f+k Solyc01g079560.2.1 26 LRVPSTLVNRMREETMG--EVLLKCGDGdKYWNITT--REDGNSMYFHGGWKEFALENHIQMTQVLFFNYDGAKTF--TVRIFDK 104 67888888777544433..788888777799*****..999999**************************998888..*****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.476 | 11 | 105 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-16 | 11 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-16 | 13 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 6.0E-7 | 14 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-10 | 25 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.96E-9 | 42 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MSNFGGNPND ELSFYKIVLD PRMEELRVPS TLVNRMREET MGEVLLKCGD GDKYWNITTR 60 EDGNSMYFHG GWKEFALENH IQMTQVLFFN YDGAKTFTVR IFDKNGLEK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g079560.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004229559.3 | 2e-77 | B3 domain-containing protein Os11g0197600-like | ||||
TrEMBL | A0A3Q7F0Z8 | 5e-76 | A0A3Q7F0Z8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g079560.2.1 | 8e-77 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3779 | 22 | 44 | Representative plant | OGRP11590 | 4 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 9e-13 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g079560.2.1 |
Publications ? help Back to Top | |||
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