PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g079360.2.1 | ||||||||
Common Name | SlWRKY37 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 241aa MW: 26883.8 Da PI: 4.7896 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.9 | 5.7e-30 | 53 | 111 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC++kk+ver+++d ++++itY+++Hnh+ Solyc01g079360.2.1 53 SDCWSWRKYGQKPIKGSPYPRGYYRCSSSkGCSAKKQVERCSKDASLFIITYTSSHNHP 111 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-31 | 44 | 113 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.76E-26 | 49 | 113 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-34 | 52 | 112 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.423 | 53 | 113 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.5E-25 | 54 | 111 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MGRSKPTKSQ SKTSRLLQPQ FLASKNRKMA QKVVMTVQME AKSLKQKNEG PPSDCWSWRK 60 YGQKPIKGSP YPRGYYRCSS SKGCSAKKQV ERCSKDASLF IITYTSSHNH PGPNLPKDSV 120 KQEPVVDQHV SLEDNNDEDD DDDDDNDTQS CKTPLNSTTT STSIPQGILE ENLFTDNFLG 180 TISYDDFLPL SYPQLMKFPK SELSEENDFY DELGELELPP SSSTSFAGIF EEAILVDPSS 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 9e-20 | 53 | 114 | 17 | 80 | Disease resistance protein RRS1 |
5w3x_D | 9e-20 | 53 | 114 | 17 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.3963 | 0.0 | leaf| trichome |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g079360.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY157061 | 0.0 | Lycopersicon esculentum WRKY transcription factor IIe-1 mRNA, partial cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001308885.1 | 1e-178 | WRKY transcription factor 37 isoform 2 | ||||
TrEMBL | M1AI28 | 1e-154 | M1AI28_SOLTU; Uncharacterized protein | ||||
STRING | Solyc01g079360.2.1 | 1e-178 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11281 | 20 | 25 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 6e-35 | WRKY DNA-binding protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g079360.2.1 |
Entrez Gene | 543856 |
Publications ? help Back to Top | |||
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