PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g079260.2.1
Common NameLOC101263542
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 321aa    MW: 36115.2 Da    PI: 6.7834
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g079260.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.98.7e-33170227259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s+fpr+YYrCt a+C+vkk+ver+ +dp++v++tYeg+H+h+
  Solyc01g079260.2.1 170 EDGYRWRKYGQKAVKNSPFPRNYYRCTNATCNVKKRVERCFSDPSIVVTTYEGKHTHP 227
                         8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-35154229IPR003657WRKY domain
SuperFamilySSF1182903.4E-29161229IPR003657WRKY domain
PROSITE profilePS5081131.582164229IPR003657WRKY domain
SMARTSM007742.7E-39169228IPR003657WRKY domain
PfamPF031061.2E-25170227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MESYKDIKME DHHPMYFIDN NGFGVTNNHS FISDYSINPS SLGFMELLGF HQDFCSVFEL  60
PKEENHYPAV CVSEEELKPP SSSSVAAAEK QKSSTTTVVA TGNVLNTPST PNCSSISSEG  120
HGDADGEVEN HDQKNTNAKQ QLKAKKTVSQ KKQKEPRFAF MTKSEVDFLE DGYRWRKYGQ  180
KAVKNSPFPR NYYRCTNATC NVKKRVERCF SDPSIVVTTY EGKHTHPSPM NTMISRPNCY  240
PINPVLPSLG TYTLPMQFNA NQSFNDNLTS SNLAINHQLD HAAFVAQGRR FCSTNEILED  300
QENDLQNLMP SAVLKHDYNR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-271622291077Probable WRKY transcription factor 4
2lex_A9e-271622291077Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.131670.0cell culture| fruit| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g079260.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001352737.10.0WRKY transcription factor 23
SwissprotO229008e-48WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A3Q7EHD60.0A0A3Q7EHD6_SOLLC; Uncharacterized protein
STRINGSolyc01g079260.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.13e-42WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  5. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]