PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g073940.2.1
Common NameLOC101251616
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 290aa    MW: 30624.7 Da    PI: 9.7918
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g073940.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.48.8e-07101122627
                         -SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                         C+ f     C++GdrC+FaHg+
  Solyc01g073940.2.1 101 CSKFNTAEGCRFGDRCHFAHGE 122
                         899999999***********96 PP
2zf-CCCH314.4e-10257281227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt+ C +f++ G C +G++C+FaHgp
  Solyc01g073940.2.1 257 KTKMCANFSK-GLCTFGEKCHFAHGP 281
                         89********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.9623462IPR000571Zinc finger, CCCH-type
SMARTSM003561.93461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-53562IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-63659IPR000571Zinc finger, CCCH-type
PfamPF146080.894259No hitNo description
Gene3DG3DSA:4.10.1000.102.9E-1194124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.69995123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-795125IPR000571Zinc finger, CCCH-type
SMARTSM003560.06697122IPR000571Zinc finger, CCCH-type
PfamPF146080.052101121No hitNo description
SuperFamilySSF547912.05E-14160235IPR004088K Homology domain, type 1
SMARTSM003224.3E-11163233IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.107.8E-15163233IPR004088K Homology domain, type 1
PROSITE profilePS5008413.334164228IPR004088K Homology domain, type 1
PfamPF000133.9E-10166230IPR004088K Homology domain, type 1
CDDcd001052.59E-13166228No hitNo description
PROSITE profilePS5010315.751255282IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-4255281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-13256287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-8256285IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6257281IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEFGRKRRGG GAFGSSGGMK KSRDVSESFT TGVGSKSKPC MKFYSTSGCS FGAGCHFLHY  60
VPGYTAMSQL SNMGSNPAPP FGRNSASFSD GPGPAMKSKF CSKFNTAEGC RFGDRCHFAH  120
GEMEIGKQVR PAYDDFQAKG PPSGFSGYLE PSQPGLAATN FGASATTTIS VDASLAGNII  180
GKSGVNSKHI CLVTGVKLFI REHETDTNKR NVELQGTFDQ INQARAMVRE LISNISTPTG  240
GLKNAAPFSR GPPGPLKTKM CANFSKGLCT FGEKCHFAHG PSELQKPLT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.218580.0callus| flower| fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g073940.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2442862e-08Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-20a14 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229351.10.0zinc finger CCCH domain-containing protein 31
SwissprotQ7F8R01e-88C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A3Q7EGP60.0A0A3Q7EGP6_SOLLC; Uncharacterized protein
STRINGSolyc01g073940.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-59C3H family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]