PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g067560.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 1210aa MW: 135562 Da PI: 9.1406

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g067560.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.7	2.3e-07	125	160	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++e+ ++++a +++G++ Wk++++ + R+++++ Solyc01g067560.2.1 125 QWSEEDLTRFYQAYRKYGKD-WKKVSSAVK-FRSAEMV 160 6***************99.****998.9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0029	122	170	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.31E-9	124	170	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-6	125	160	IPR001005	SANT/Myb domain
CDD	cd00167	3.82E-5	126	160	No hit	No description
Pfam	PF06584	1.3E-32	704	804	IPR033471	DIRP domain
SMART	SM01135	4.8E-57	704	805	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1210 aa Download sequence Send to blast
MSIIKNRGLK YYINFFSRLL PPKYFHLFLP ILSTANFCNF SPALQNSPNS PICIEAHGSE 60 FGLRSSNSFR RFFKIFGMAP AKKVRSLSKR QSLTTDISPS KDGNGDNAKK SLQRKKKLSD 120 MLGPQWSEED LTRFYQAYRK YGKDWKKVSS AVKFRSAEMV EALYTMNRAY LSLPEGTASV 180 AGLIAMMTDH YCNLAASDSE QESNEDAGTS RKFQNRARVK VLPDTSKASE MTSSALAASH 240 GCLTLLKKKR SGGSRPRAVG KRTPRFPVSF SYENPKGEKY FSPSRQSLKL QADDSDDDVK 300 IALVLTEASQ RGGSPQVSKT PNRRTDGAMT SPIGTAERKR VKMDMGNVKL LSNEVDGEEG 360 SMEADTGELM RYKNELGESG TVDRTTQKRK RPYGRKLEVD DSGDNHFDDI REACSGTEEG 420 QKLGAARGQL EMEATNEKNS RKRSKKVLFG RDESSAFDAL QTLADLSLMM PTAENEDESM 480 IQVKDEIDDH VDESGSLEAI PAHRQRDKRG SMGVKSRWSQ PLSKFEVASS TVSKHGRVTP 540 TDANTGPEAK QARKAQKAMS SKARKAEGHL NYDVTESQEA AAKEASKKST NKGKRSYQVS 600 PKFIKDQEHS SCADPRTERS DSAQSTAQIP VENQVNLPTK VRSRRKMDLK KPLRQKDSKM 660 SDKGLDDTSA SFTALCDKAF SLKKKISSCL SNHQVRRWCT YEWFYSAIDY PWFAKREFVE 720 YLYHVGLGHV PRLTRVEWGV IRSSLGKPRR FSEQFLNEEK EKLNQYRESV RSHYTELREG 780 TREGLPTDLA RPLSVGQRVI AIHPKTREIH DGNVLTVDHS RCRVQFDRPE LGVEFVMDID 840 CMPLNPFENM PTLLTRHADA VDKFFESSNE LKINARANEF MQFPAGDSQE NGDISSHFSP 900 PNHPISNLLK QTKVVSAEAD MQSKSGVMET TAFQQIAYSK PSAVALIQAK EADVQALAEL 960 TRALDKKDAV VSELRRMNDD VLENQKSGDC SLKDSEPFKK QYAAVLIQLN EVNEQVSSAL 1020 FRLRQRNTYH GSIPLAWPRP VPNFADPSIA STFDRCTNQP QESGFLVNEI IENSKIKSRT 1080 MVDAAVQAML SFTGRDNTTE KIEEAIDYVN DRILLDDSCV PTPPDLKSKN MSDRNEAEIP 1140 SELITKCVST LLMIQKCTER QFPPADVAKV LDSAVASLQP CCSQNFPLYA EIQKCMRIIK 1200 NQILALVPT*

Sequence ? help Back to Top

Protein Sequence Length: 1210 aa Download sequence Send to blast

MSIIKNRGLK YYINFFSRLL PPKYFHLFLP ILSTANFCNF SPALQNSPNS PICIEAHGSE  60
FGLRSSNSFR RFFKIFGMAP AKKVRSLSKR QSLTTDISPS KDGNGDNAKK SLQRKKKLSD  120
MLGPQWSEED LTRFYQAYRK YGKDWKKVSS AVKFRSAEMV EALYTMNRAY LSLPEGTASV  180
AGLIAMMTDH YCNLAASDSE QESNEDAGTS RKFQNRARVK VLPDTSKASE MTSSALAASH  240
GCLTLLKKKR SGGSRPRAVG KRTPRFPVSF SYENPKGEKY FSPSRQSLKL QADDSDDDVK  300
IALVLTEASQ RGGSPQVSKT PNRRTDGAMT SPIGTAERKR VKMDMGNVKL LSNEVDGEEG  360
SMEADTGELM RYKNELGESG TVDRTTQKRK RPYGRKLEVD DSGDNHFDDI REACSGTEEG  420
QKLGAARGQL EMEATNEKNS RKRSKKVLFG RDESSAFDAL QTLADLSLMM PTAENEDESM  480
IQVKDEIDDH VDESGSLEAI PAHRQRDKRG SMGVKSRWSQ PLSKFEVASS TVSKHGRVTP  540
TDANTGPEAK QARKAQKAMS SKARKAEGHL NYDVTESQEA AAKEASKKST NKGKRSYQVS  600
PKFIKDQEHS SCADPRTERS DSAQSTAQIP VENQVNLPTK VRSRRKMDLK KPLRQKDSKM  660
SDKGLDDTSA SFTALCDKAF SLKKKISSCL SNHQVRRWCT YEWFYSAIDY PWFAKREFVE  720
YLYHVGLGHV PRLTRVEWGV IRSSLGKPRR FSEQFLNEEK EKLNQYRESV RSHYTELREG  780
TREGLPTDLA RPLSVGQRVI AIHPKTREIH DGNVLTVDHS RCRVQFDRPE LGVEFVMDID  840
CMPLNPFENM PTLLTRHADA VDKFFESSNE LKINARANEF MQFPAGDSQE NGDISSHFSP  900
PNHPISNLLK QTKVVSAEAD MQSKSGVMET TAFQQIAYSK PSAVALIQAK EADVQALAEL  960
TRALDKKDAV VSELRRMNDD VLENQKSGDC SLKDSEPFKK QYAAVLIQLN EVNEQVSSAL  1020
FRLRQRNTYH GSIPLAWPRP VPNFADPSIA STFDRCTNQP QESGFLVNEI IENSKIKSRT  1080
MVDAAVQAML SFTGRDNTTE KIEEAIDYVN DRILLDDSCV PTPPDLKSKN MSDRNEAEIP  1140
SELITKCVST LLMIQKCTER QFPPADVAKV LDSAVASLQP CCSQNFPLYA EIQKCMRIIK  1200
NQILALVPT*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269\|PubMed:15246533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g067560.2.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243479	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-67a11 map 1, complete sequence
GenBank	AC243718	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-7h19 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010321117.1	0.0	protein ALWAYS EARLY 3 isoform X2
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A3Q7EGH8	0.0	A0A3Q7EGH8_SOLLC; Uncharacterized protein
STRING	Solyc01g067560.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3312	23	33
Representative plant	OGRP2479	13	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Solyc01g067560.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]