PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc01g067540.1.1 | ||||||||
Common Name | LOC101249486 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 322aa MW: 36162.5 Da PI: 4.9921 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.3e-18 | 56 | 104 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+++++g Solyc01g067540.1.1 56 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 104 66******.**********965...5************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.7E-32 | 55 | 118 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.613 | 55 | 112 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.57E-28 | 55 | 111 | No hit | No description |
PRINTS | PR00367 | 1.1E-7 | 56 | 67 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-27 | 56 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-20 | 56 | 112 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.3E-11 | 58 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 78 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010102 | Biological Process | lateral root morphogenesis | ||||
GO:0010432 | Biological Process | bract development | ||||
GO:0010451 | Biological Process | floral meristem growth | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 322 aa Download sequence Send to blast |
MSSSNSTPIS SDNQLPFGMF EPIRTPTGYS WLQRNTALCQ PSEKRGRRKQ TEPGRFLGVR 60 RRPWGRYAAE IRDPTTKERH WLGTFDTAQE AALAYDRAAL SMKGTQARTN FIYTSDSANT 120 NFPSLISPFE HVQNMLNPNN THFNFNTHIN KNTKTKTTTT TNSDESSSYG SSPNENNSFV 180 FLNDDMNNNN NNNTNSGYLL DCIVPDSCLK PPPQQPQEPS STPQSKMNGE IENTYYDTNG 240 FFDMSSSWES SCELSAMTMN HSSNNMNHQM MDDVADGSYY YPNMEINNYD HLMMMPNHET 300 TNAAAAAAAF GDVEFGYTTL F* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-20 | 46 | 111 | 5 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00520 | DAP | Transfer from AT5G18560 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc01g067540.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC243712 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-44j2 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004229302.3 | 0.0 | ethylene-responsive transcription factor ERF086 | ||||
TrEMBL | A0A3Q7EZV2 | 0.0 | A0A3Q7EZV2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g067540.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9307 | 21 | 25 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18560.1 | 7e-49 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc01g067540.1.1 |
Entrez Gene | 101249486 |
Publications ? help Back to Top | |||
---|---|---|---|
|