PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g065540.2.1
Common NameLOC101267446
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARR-B
Protein Properties Length: 678aa    MW: 74817.6 Da    PI: 6.5155
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g065540.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.76.1e-29211264155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Solyc01g065540.2.1 211 KPRVVWSVELHQQFVQAVHQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 264
                         79*******************.********************************8 PP
2Response_reg82.31.6e-27311391109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vdD+p+ +++l+++l++ +y ev+ +  +e al  l+e++  +D+++ D+ mp+mdG++ll++i  e  +lp+i+++a ++++ + + 
  Solyc01g065540.2.1  31 VLVVDDDPTCLKILEKMLKNCHY-EVTKCNRAEVALSHLRENKngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDSKDVVMKG 119
                         89*********************.***************999999**********************6654.8****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         +  Ga d+l Kp+ +e+l +
  Solyc01g065540.2.1 120 VTHGAYDYLIKPVRIEALKN 139
                         ****************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.7E-18211668IPR017053Response regulator B-type, plant
SuperFamilySSF521725.69E-3628151IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.0E-4228173No hitNo description
SMARTSM004483.4E-3129141IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.44330145IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-2431139IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.28E-2832144No hitNo description
PROSITE profilePS5129411.523208267IPR017930Myb domain
SuperFamilySSF466892.87E-20209268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-30210269IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-25211264IPR006447Myb domain, plants
PfamPF002496.9E-9213263IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MNIGSGSVLS STGSWKSGDV VPDQFPVGLR VLVVDDDPTC LKILEKMLKN CHYEVTKCNR  60
AEVALSHLRE NKNGFDIVIS DVHMPDMDGF KLLEHIGLEM DLPVIMMSAD DSKDVVMKGV  120
THGAYDYLIK PVRIEALKNI WQHVVRKKKH EWRDNNFDQS GSVEEGDRQQ KQSEDVDYSS  180
SANEGNWKNS KKRKEEDDEG EERDDTSSLK KPRVVWSVEL HQQFVQAVHQ LGIDKAVPKK  240
ILELMNVPGL TRENVASHLQ KYRLYLRRLS GVSQHQNGLN NSFMGRPDAT FGTISSLNGL  300
DLQAIAAAGQ IPAQSLATLQ AAALGRSASK SAISMPLVDQ RNLFSFENSQ VRFPEGQQQL  360
NNSNKQIDLL HGIPTTMEPK QLANLHHPSQ SFMGMNMQVN NSMAQHNNSV IMRMSQSQPR  420
AQMLSGANNG SQISRLPFSR QQSLSSEGIP GVVLAQSRTV DNARASVYNP VSQASSMVDF  480
SVNQSKDLQN YNFSLGSNSA GMSTLTNRGM LQEEVNSDIK GSRGFPSNYD IFNDLHQQPK  540
PQNWGLQNVG SSFDSSHHPS IQGSQGVPSQ LLMQQGISST HNNGQNRNGP IGKPMYTNGE  600
ESGHTNLMGG PQLNSVSRNT LAVKAERFLD ADYQSTNFPE QFGQDDLMSA FLKQQGSVGP  660
VETEFGFDGY TLDNLPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-21207270164ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g065540.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229281.10.0two-component response regulator ARR2
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A3Q7EF960.0A0A3Q7EF96_SOLLC; Two-component response regulator
STRINGSolyc01g065540.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31912450
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.21e-167response regulator 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  3. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  4. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  5. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  6. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  7. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  8. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  9. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  10. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]