PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g060310.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 140aa MW: 15117.5 Da PI: 8.9865 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.4 | 9.4e-24 | 14 | 59 | 2 | 47 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +i+n++n qvtfskRr+g++KKA+ELS+LC+a+va++ fs+++k+y Solyc01g060310.1.1 14 KIQNQTNLQVTFSKRRAGLFKKASELSTLCGANVAIVSFSPSNKVY 59 79******************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.376 | 5 | 65 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-31 | 5 | 64 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.30E-34 | 6 | 73 | No hit | No description |
SuperFamily | SSF55455 | 5.23E-27 | 6 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-19 | 7 | 27 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-24 | 14 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-19 | 27 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-19 | 42 | 63 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MRKPNGRKKI EIAKIQNQTN LQVTFSKRRA GLFKKASELS TLCGANVAIV SFSPSNKVYA 60 CGHPSVESIV DKFIGENTPP ETDDLNPIIV MGLSFLETDY HLGPTTELAQ VCVPAARQMS 120 GARSIIVVSQ CVLERLIAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 1e-17 | 6 | 82 | 1 | 77 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 1e-17 | 6 | 82 | 1 | 77 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 1e-17 | 6 | 82 | 1 | 77 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 1e-17 | 6 | 82 | 1 | 77 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
3kov_A | 2e-17 | 6 | 82 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3kov_B | 2e-17 | 6 | 82 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3kov_I | 2e-17 | 6 | 82 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3kov_J | 2e-17 | 6 | 82 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_A | 2e-17 | 6 | 82 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_B | 2e-17 | 6 | 82 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_C | 2e-17 | 6 | 82 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_D | 2e-17 | 6 | 82 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_I | 2e-17 | 6 | 82 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_J | 2e-17 | 6 | 82 | 1 | 77 | Myocyte-specific enhancer factor 2A |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g060310.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240193 | 1e-150 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-152e17 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004229069.1 | 4e-60 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 2e-30 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A3Q7EFF6 | 2e-59 | A0A3Q7EFF6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g060310.1.1 | 3e-99 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA18460 | 2 | 4 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-33 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g060310.1.1 |