PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g060300.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

M-type_MADS

Protein Properties

Length: 212aa MW: 23122.6 Da PI: 9.3583

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g060300.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71.8	6.1e-23	14	59	2	47
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +i+n++n qvt+skRr+g++KKA+ELS+LC+a+va++ fs+++k+y Solyc01g060300.1.1 14 KIQNQTNLQVTLSKRRAGLFKKASELSTLCGANVAIVAFSPSNKVY 59 79******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-30	5	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.661	5	65	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.62E-26	6	80	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.56E-33	6	73	No hit	No description
PRINTS	PR00404	2.2E-18	7	27	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.4E-23	14	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-18	27	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-18	42	63	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MRKPNGRKKI EIAKIQNQTN LQVTLSKRRA GLFKKASELS TLCGANVAIV AFSPSNKVYA 60 CGHPSVESIV DKFIGENPPP ETDDPNPIIV MTADTIPKGS PFTSMQEFSL GIDFGKLCQI 120 TCVPQLIESC PNSSILQIWT DYHLGSTNEL AHQALLDLGG YRLVILPLHR AGTVRCSVKP 180 ASRSPFHFRN PSAHSFDWIA RPNSMLGQGR P*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	1e-16	6	89	1	84	Myocyte-specific enhancer factor 2A
3kov_B	1e-16	6	89	1	84	Myocyte-specific enhancer factor 2A
3kov_I	1e-16	6	89	1	84	Myocyte-specific enhancer factor 2A
3kov_J	1e-16	6	89	1	84	Myocyte-specific enhancer factor 2A
3p57_A	1e-16	6	89	1	84	Myocyte-specific enhancer factor 2A
3p57_B	1e-16	6	89	1	84	Myocyte-specific enhancer factor 2A
3p57_C	1e-16	6	89	1	84	Myocyte-specific enhancer factor 2A
3p57_D	1e-16	6	89	1	84	Myocyte-specific enhancer factor 2A
3p57_I	1e-16	6	89	1	84	Myocyte-specific enhancer factor 2A
3p57_J	1e-16	6	89	1	84	Myocyte-specific enhancer factor 2A
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Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g060300.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240193	1e-134	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-152e17 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Solyc01g060300.1.1	1e-156	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA18460	2	4
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-29	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Solyc01g060300.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]