PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g059950.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GRAS

Protein Properties

Length: 281aa MW: 32544.9 Da PI: 6.3081

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g059950.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	131.1	1.3e-40	2	196	173	372
GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263 + pf fn+ v+++++dl+ + ++++++E+++V + + l +l + +++ + vL+++ sl+ v++v+e ea+ n++ F+++f e++ Solyc01g059950.1.1 2 KCPFFFNA-VVSEMKDLSKNLFELDTNEVVVVYSEYVLGGML----TWPNHLEVVLRFIESLNTCVIIVIETEANINEPIFMDQFNESVFL 87 779***.7999************************9....55555666********************************* PP GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 y++lfd+le+ ++r++++r+ Er +l++ i nv++ceg+ r+ + +le Wr+ +e++G k+ +lse qa+l++ + + +++ + Solyc01g059950.1.1 88 YATLFDCLETFMGRDNQHRMEFERLVLRKIIHNVITCEGEGRIFHNVRLEVWRALFENFGIKETELSELSLYQANLIVDRSAHGFCTLDMD 178 *****************************************************************************94447999 PP GRAS 355 sgslvlgWkdrpLvsvSa 372 ++l++ Wk+ p+v++S+ Solyc01g059950.1.1 179 GNCLTIKWKGTPIVFASV 196 ***************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	18.533	1	178	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.3E-38	2	196	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MKCPFFFNAV VSEMKDLSKN LFELDTNEVV VVYSEYVLGG MLTWPNHLEV VLRFIESLNT 60 CVIIVIETEA NINEPIFMDQ FNESVFLYAT LFDCLETFMG RDNQHRMEFE RLVLRKIIHN 120 VITCEGEGRI FHNVRLEVWR ALFENFGIKE TELSELSLYQ ANLIVDRSAH GFCTLDMDGN 180 CLTIKWKGTP IVFASVLLFK ELCITSVNLF KRELIRRREH YHLIDMKVGK RNHLIWTKVL 240 QNAKPIAVVC YQSSPFFQVP QFTGIQAIID NVKSAKEGFI *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g059950.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC238908	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-126f9 map 1, complete sequence
GenBank	AC245968	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-22n14 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015079853.1	9e-96	DELLA protein RGL2-like
Refseq	XP_015169309.1	4e-95	PREDICTED: DELLA protein RGL3-like
TrEMBL	K4AWA2	0.0	K4AWA2_SOLLC; Uncharacterized protein
STRING	Solyc01g059950.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA18359	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17490.1	9e-24	RGA-like protein 3

Link Out ? help Back to Top
Phytozome	Solyc01g059950.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]