PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g058540.2.1

Common Name

LOC101253121

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 325aa MW: 35485.8 Da PI: 4.5034

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g058540.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.6	2.3e-32	157	215	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s+fprsY+rCt a+C vkk+vers+ dp++v++tYeg H+h+ Solyc01g058540.2.1 157 LDDGFRWRKYGQKAVKNSPFPRSYFRCTIATCGVKKRVERSSADPSTVITTYEGVHTHP 215 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.1E-32	142	217	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-28	149	217	IPR003657	WRKY domain
PROSITE profile	PS50811	30.021	152	217	IPR003657	WRKY domain
SMART	SM00774	7.1E-39	157	216	IPR003657	WRKY domain
Pfam	PF03106	1.8E-25	158	215	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MSAFFPDESS SFFFDFPLYE TENVSSSPMR LIESMFTSPD DPITDSSSLF DLLQPPPFPP 60 PPPPPPPPPP PPPADVPLLN PSPIANTSAN SSELSSSSTD VAANDDFLQM IEMVEEQLEN 120 DEDKIEDNIQ LIPKKKKARK ERAPRFAFMT KTEIDHLDDG FRWRKYGQKA VKNSPFPRSY 180 FRCTIATCGV KKRVERSSAD PSTVITTYEG VHTHPCPITP RSSIGFYRDT IDYSGGGSIG 240 VGVGVGLGGV ASSSSLFLPE FNYQAQQQQP STYFQAPALP PINSFTTNSA QGGMLLPSTS 300 SSFGRDDGLL QDMVISQMMP KPNQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	7e-26	150	217	10	77	Probable WRKY transcription factor 4
2lex_A	7e-26	150	217	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g058540.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC246544	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-67c1 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004229088.1	0.0	probable WRKY transcription factor 48
TrEMBL	A0A3Q7EEW6	0.0	A0A3Q7EEW6_SOLLC; Uncharacterized protein
STRING	Solyc01g058540.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1309	24	79
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	2e-41	WRKY DNA-binding protein 48

Link Out ? help Back to Top
Phytozome	Solyc01g058540.2.1
Entrez Gene	101253121

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]