PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g014850.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 251aa    MW: 26669.1 Da    PI: 8.5004
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g014850.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.99.5e-105882226
                        -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                        kt+lC  f     Ck+Gd+C+FaHg
  Solyc01g014850.2.1 58 KTRLCTKFNTAEGCKFGDQCRFAHG 82
                        8***********************9 PP
2zf-CCCH29.61.2e-09217241126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt++C +f +  tC +G++C+FaHg
  Solyc01g014850.2.1 217 YKTKICENFTK-STCTFGEKCHFAHG 241
                         9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.812119IPR000571Zinc finger, CCCH-type
PfamPF146081.5216No hitNo description
Gene3DG3DSA:4.10.1000.105.6E-135487IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-85586IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5825784IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-75882IPR000571Zinc finger, CCCH-type
SMARTSM003560.00395883IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.9E-15121199IPR004088K Homology domain, type 1
SMARTSM003222.5E-12126196IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.5E-16127197IPR004088K Homology domain, type 1
PROSITE profilePS5008414.34127191IPR004088K Homology domain, type 1
CDDcd001051.51E-15129191No hitNo description
PfamPF000136.1E-11129193IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.3E-15214247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-8215246IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.882216243IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6216242IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-7217241IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MFFSGCPFGE GCHFLHYVPG GLKAVTQMLG SNPALPAAPR NSIAPPSFPD GSSSPVVKTR  60
LCTKFNTAEG CKFGDQCRFA HGDWELGRPA APLHEESHGM FQMHGRYGSR PETNPTGLGA  120
AASFGSSATA KISVDASLAG RIIGKGGVNS KHICRVTGAK FSIRDNESDP NLRNIELEGT  180
IDQIEQASRM VRELIQSVTT SAAPPMKNSS SSVTSNYKTK ICENFTKSTC TFGEKCHFAH  240
GAEELRKSGP *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.137240.0cell culture| fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g014850.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2461110.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-18b12 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004228352.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R04e-88C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A3Q7EUP20.0A0A3Q7EUP2_SOLLC; Uncharacterized protein
STRINGSolyc01g014850.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-50C3H family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]