PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g009440.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 23844.8 Da PI: 5.1944 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.3e-17 | 53 | 102 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +Wv+eIr+p +k++r++lg+f t+e Aa+a++ a+++l+g Solyc01g009440.1.1 53 LYRGVRKRN-GEKWVCEIREP---NKKTRIWLGTFTTPELAARAHDVAALALRG 102 69***9887.899*******9...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.9E-12 | 52 | 102 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.02E-29 | 52 | 110 | No hit | No description |
PROSITE profile | PS51032 | 21.852 | 53 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.3E-30 | 53 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-20 | 53 | 111 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.9E-29 | 53 | 116 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-7 | 54 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-7 | 76 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MDFEDEQTSS SSSSSDHDIK EKNIDHSSCS MNNNIQFKRR AGRKKFKETR HPLYRGVRKR 60 NGEKWVCEIR EPNKKTRIWL GTFTTPELAA RAHDVAALAL RGSNALLNFP GSAWSLPKAK 120 SSSPQDIQIA VLQVNEELIV SSSPSEEPSC KPKDDEVNSL MEFMDEEAMF NMPIFIDSMA 180 EGMLLTPPAM KRGFNWGDVE EDVEFTLWKD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 51 | 110 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g009440.1.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004228864.2 | 1e-156 | dehydration-responsive element-binding protein 1F-like | ||||
Swissprot | Q9FJ93 | 4e-53 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | M1DGQ8 | 1e-139 | M1DGQ8_SOLTU; Uncharacterized protein | ||||
STRING | Solyc01g009440.1.1 | 1e-155 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 5e-44 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g009440.1.1 |