PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g008910.2.1 | ||||||||
Common Name | LOC101256615 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 477aa MW: 53625.3 Da PI: 6.4109 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 463.4 | 1.3e-141 | 51 | 473 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lLl+cA++v++g+le+a+ +L ++s lasp+gd+mqR+a+yf+e La r++rs++++ykal++++ + +se + + k+f+e +P+l Solyc01g008910.2.1 51 LIHLLLACANHVANGNLENANIALDQISYLASPNGDTMQRIASYFAESLADRILRSWNGIYKALNSTKLR--VVSEDILVKKMFFEYFPFL 139 689**************************************************************99998..69***************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 k++ ++aNqaI ea+ege++vHi+D+++s++lQW aLlq L++Rpegpp+lRiTgv++ +k+ le++++ L++ Ae+l+vpf+f+ v Solyc01g008910.2.1 140 KVASVIANQAIIEAMEGEKMVHIVDLNASEPLQWRALLQDLSARPEGPPHLRITGVHQ----QKQVLEQIAHVLTEEAEKLDVPFQFHQ-V 225 **********************************************************....9**************************.7 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll..........................................................d 215 +++le+l++e+Lrvk+gEala+++v+qlh+ll + Solyc01g008910.2.1 226 VSKLENLDIEKLRVKTGEALAISSVMQLHTLLahddepqkksplgfkhlngvhlqrailnqntlgdllenemmthsvfspgnesasssplS 316 99**********************************************************************************9877653 PP GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr 306 +s+s+ + + +L+++++lsPkv+vv+eq+++hn+++++er++e+l+yy+alfd+le +l r+s er kvE++++g+ei+n+vaceg err Solyc01g008910.2.1 317 SSAST--KMEGFLHALWGLSPKVMVVTEQDSNHNGTTLMERLSESLYYYAALFDCLEFTLQRTSLERLKVEKMMFGEEIKNIVACEGGERR 405 33333..4588******************************************************************************** PP GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 erhe+l kW +rl+ aGF +vpls++a+ qa++ll+ ++ +gy++++e+gs+v++W+dr+L+svSaWr Solyc01g008910.2.1 406 ERHEKLDKWFQRLDGAGFMNVPLSYYAMLQARRLLQSYSCEGYKIKDENGSVVICWHDRALFSVSAWR 473 *******************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.294 | 25 | 453 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.4E-139 | 51 | 473 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MLQDDGSSSV TSSSPLQNFP MMSISPSFVG GGGSPYQWLK DLKSEDRGLY LIHLLLACAN 60 HVANGNLENA NIALDQISYL ASPNGDTMQR IASYFAESLA DRILRSWNGI YKALNSTKLR 120 VVSEDILVKK MFFEYFPFLK VASVIANQAI IEAMEGEKMV HIVDLNASEP LQWRALLQDL 180 SARPEGPPHL RITGVHQQKQ VLEQIAHVLT EEAEKLDVPF QFHQVVSKLE NLDIEKLRVK 240 TGEALAISSV MQLHTLLAHD DEPQKKSPLG FKHLNGVHLQ RAILNQNTLG DLLENEMMTH 300 SVFSPGNESA SSSPLSSSAS TKMEGFLHAL WGLSPKVMVV TEQDSNHNGT TLMERLSESL 360 YYYAALFDCL EFTLQRTSLE RLKVEKMMFG EEIKNIVACE GGERRERHEK LDKWFQRLDG 420 AGFMNVPLSY YAMLQARRLL QSYSCEGYKI KDENGSVVIC WHDRALFSVS AWRCRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 6e-40 | 35 | 475 | 2 | 380 | Protein SCARECROW |
5b3h_D | 6e-40 | 35 | 475 | 2 | 380 | Protein SCARECROW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g008910.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004228489.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A3Q7E947 | 0.0 | A0A3Q7E947_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g008910.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 | Representative plant | OGRP2564 | 14 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g008910.2.1 |
Entrez Gene | 101256615 |
Publications ? help Back to Top | |||
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