PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g008730.2.1

Common Name

LOC101260964

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 328aa MW: 36368.1 Da PI: 8.9236

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g008730.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.1	1.1e-09	41	83	3	45
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + k rr+ +NReAAr+sR+RKka++++Le +L++ ++L Solyc01g008730.2.1 41 DQKTLRRLSQNREAARKSRLRKKAYVQQLESSRMKLTQLEQEL 83 67899*************************9888888777655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.6E-8	36	86	No hit	No description
SMART	SM00338	1.4E-7	39	102	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	4.4E-7	41	85	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.415	41	85	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.98E-7	43	86	No hit	No description
PROSITE pattern	PS00036	0	46	61	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.9E-31	126	200	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MADVSAMTDT STDVDTDDKN LRYLNSLTLG ATSDASDKTR DQKTLRRLSQ NREAARKSRL 60 RKKAYVQQLE SSRMKLTQLE QELQRARQQG IYVSSSGDQS QAMSGNGALA FDVEYARWLE 120 EHNRRTNELR GAVSSHAGDG ELRIIVDGIL AHYDELFKIK ADAAKADVFH ILSGMWKTPA 180 ERCFLWLGGF RSSELLKLLI NQLEPLTDQQ SLAINNLQQS SQLAEDALSQ GIESLQQSLA 240 ETLAGSLGPS GSSGNVANYM GQMAMAMGKL GTLEGFILQA DNLRQRMLQQ MHRILTTRQS 300 ARALLAIGDY FARLRALSSL WLARPRE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.18443	0.0	fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g008730.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC171735	1e-32	Solanum lycopersicum chromosome 11 clone C11HBa0119D16, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004228505.1	0.0	transcription factor TGA2.2-like
Refseq	XP_010314690.1	0.0	transcription factor TGA2.2-like
Swissprot	Q41558	1e-177	HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBL	A0A3Q7EA13	0.0	A0A3Q7EA13_SOLLC; Uncharacterized protein
STRING	Solyc01g008730.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA820	23	85
Representative plant	OGRP722	16	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	1e-145	bZIP family protein

Link Out ? help Back to Top
Phytozome	Solyc01g008730.2.1
Entrez Gene	101260964

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]