PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g008230.2.1

Common Name

TCP15

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 250aa MW: 26086.2 Da PI: 9.2448

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g008230.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.3	1.1e-37	31	116	2	88
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 ++kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s ++s s s + Solyc01g008230.2.1 31 TVKKPPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStVSVSLRNSIS--SVT 116 689******************************************************************87743333333333..333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.675	37	91	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.6E-34	37	126	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MSTSVEQNGA VLLDSTTGSG GGVANSNGAL TVKKPPAKDR HSKVDGRGRR IRMPIVCAAR 60 VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTIPAS FSTVSVSLRN SISSVTASAP 120 VDHKLPSPSP SLLHPLISPA PFLLGKRLRS EDDDNGSGDK DVVPSAGFWA VPARPDFGQV 180 WSFAAPSPEI SHSAAAAMNT QPSRFLQQQM EEASAGRVGN YFPIAQGHLN LLASLSGSGS 240 GPRRDDDGQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.12060	0.0	cell culture\| floral bud\| flower\| fruit\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g008230.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Interaction ? help Back to Top
Source	Intact With
BioGRID	Solyc06g070900.2, Solyc08g080150.1, Solyc06g065190.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC239435	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-305j13 map 1, complete sequence
GenBank	GQ496333	0.0	Solanum lycopersicum TCP transcription factor 15 (TCP15) mRNA, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001233810.1	0.0	TCP transcription factor 15
Swissprot	Q9FMX2	2e-80	TCP7_ARATH; Transcription factor TCP7
TrEMBL	G3BGV5	1e-179	G3BGV5_SOLLC; TCP transcription factor 15
STRING	Solyc01g008230.2.1	1e-180	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42
Representative plant	OGRP8514	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-72	TCP family protein

Link Out ? help Back to Top
Phytozome	Solyc01g008230.2.1
Entrez Gene	100736520

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Parapunova V, et al. Identification, cloning and characterization of the tomato TCP transcription factor family. BMC Plant Biol., 2014. 14: p. 157 [PMID:24903607]