PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g005660.1.1
Common NameLOC101243923
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 309aa    MW: 35061.1 Da    PI: 6.6175
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g005660.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-173077148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEdell ++v + G g+W+t +++ g+ R++k+c++rw +yl
  Solyc01g005660.1.1 30 RGPWTPEEDELLMNYVSKEGEGRWRTLPKKAGLFRCGKSCRLRWMNYL 77
                        89********************************************97 PP
2Myb_DNA-binding48.32.2e-1588128648
                         HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +eE++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Solyc01g005660.1.1  88 PEEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 128
                         8****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-232179IPR009057Homeodomain-like
PROSITE profilePS5129418.1452577IPR017930Myb domain
SuperFamilySSF466895.14E-3027124IPR009057Homeodomain-like
SMARTSM007172.1E-132979IPR001005SANT/Myb domain
PfamPF002491.2E-153077IPR001005SANT/Myb domain
CDDcd001677.24E-113277No hitNo description
PROSITE profilePS5129425.06278132IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2480133IPR009057Homeodomain-like
SMARTSM007171.8E-1482130IPR001005SANT/Myb domain
PfamPF002493.6E-1488128IPR001005SANT/Myb domain
CDDcd001677.79E-1288128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MRTPSSSSSS SLSSRTKIVT PCCTKIGLKR GPWTPEEDEL LMNYVSKEGE GRWRTLPKKA  60
GLFRCGKSCR LRWMNYLRPS VKRGHILPEE EDLILRLHRL LGNRWSLIAG RIPGRTDNEI  120
KNYWNTHLSK KLINQGIDPR THKPLILNNP NSSNSDDNHI ITNKANSSSP SSSSKLANNY  180
NLNTINIPNP IYTPNFQMKE PLRSSINNNN CPGETTSPDD DYQYQSSNVM LANYRDDDMN  240
IVVHDEGDDE MNCCADDVFS SFLNSLINED MFMNCQNQQI NGTLQDFDHF MASSSPSYDQ  300
NNLKTMDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-26281325108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g005660.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004228932.10.0transcription repressor MYB5-like
SwissprotQ388503e-82MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A0V0I4920.0A0A0V0I492_SOLCH; Putative transcription repressor MYB5-like (Fragment)
STRINGSolyc01g005660.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-79myb domain protein 5
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]