PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g005130.2.1 | ||||||||
Common Name | LOC101260165 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 251aa MW: 27500.6 Da PI: 6.7193 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0015 | 97 | 119 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C + F ++ L H++ H Solyc01g005130.2.1 97 FSCNFCRRKFYSSQALGGHQNAH 119 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.72E-6 | 95 | 124 | No hit | No description |
PROSITE profile | PS50157 | 11.198 | 97 | 124 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 99 | 119 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MKPPNFNLES EDESEVSSSQ VASNTSAQEI SPDPYKDNTT NSSCLTNSLN LQQESKAVTL 60 DLTLGFNSGA DTESKGNPEA GSEVVPHPPA AQVSRIFSCN FCRRKFYSSQ ALGGHQNAHK 120 RERTLAKRAM RMGMLSERYA SLASLPLHGS PYRSLGIEAH ASVHQRASQQ QERHMHAIRG 180 GARFEQSYFG VPVYMEDDDM EMFWPGSFRQ VDGVGSNVVL NSGQRSNINF VPMAPPPNTQ 240 PSLPDLNLKL * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.11355 | 0.0 | callus| fruit| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g005130.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246914 | 8e-08 | Solanum lycopersicum chromosome 3 clone EcoRI0010I07, complete sequence | |||
GenBank | AC246981 | 8e-08 | Solanum lycopersicum chromosome 3 clone EcoRI0010I07, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004228749.1 | 0.0 | zinc finger protein 4 | ||||
Refseq | XP_004228750.1 | 0.0 | zinc finger protein 4 | ||||
Swissprot | Q39263 | 2e-45 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A3Q7E740 | 0.0 | A0A3Q7E740_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g005130.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1283 | 23 | 47 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 2e-47 | zinc finger protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g005130.2.1 |
Entrez Gene | 101260165 |