PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc00g154980.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | EIL | ||||||||
Protein Properties | Length: 297aa MW: 33472.6 Da PI: 8.3896 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 309.3 | 1.1e-94 | 1 | 271 | 64 | 353 |
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSS CS EIN3 64 mevcnaqGfvYgiipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqh 154 mevc+ qGfvYgi++ekgk+v+g sdsL++WW ekv+fd+n+p+ai+k+ +l+ + e+ l+ + s l+elqDTtl+S+Lsalmqh Solyc00g154980.1.1 1 MEVCKGQGFVYGIVSEKGKLVSGCSDSLQQWWMEKVRFDQNAPIAIAKS-LPKLVEE-ENMLDP-NASFMCLLEELQDTTLSSILSALMQH 88 9************************************************.5567755.444444.7899999******************* PP SSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHH CS EIN3 155 cdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfa 245 c ppqrrfpl++g++pPWWPtG+elw+g +gls++qg+ppy+kph lkkawkvsvL+a ikhm p++ ++r+l+ qsk lq+km+ake+ + Solyc00g154980.1.1 89 CIPPQRRFPLDRGLAPPWWPTGNELWCGDQGLSQEQGPPPYRKPHGLKKAWKVSVLAAIIKHMCPDLGRMRRLVNQSKNLQNKMTAKETST 179 ******************************************************************************************* PP HHHHHTTTTT-S--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXX CS EIN3 246 llsvlnqeekecatvsahssslrkqspkvtlsceqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesakvsskevsrtcqssqfrg 336 +++v+nqee+++ k +++++s+++ +v++++e + + v + ++ +krk + + ++v++ q+ ++++ Solyc00g154980.1.1 180 WSKVVNQEEALL-----------KLTRSLKISTSKG-EVNKDNEDQL-DFTFVP--KMLTKDDKRK-SIIFDHDLNMEDVVYASQNMNCPQ 254 *********976...........4566788888855.5555555552.233333..3577777887.6777777777889*********** PP .XXXXXXXXXXXXXXXX CS EIN3 337 setelifadknsisqne 353 se l+f dkn + ++e Solyc00g154980.1.1 255 SELGLGFVDKNLRIEHE 271 ***********998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 3.4E-88 | 1 | 188 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 9.5E-63 | 63 | 192 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 1.31E-55 | 68 | 191 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MEVCKGQGFV YGIVSEKGKL VSGCSDSLQQ WWMEKVRFDQ NAPIAIAKSL PKLVEEENML 60 DPNASFMCLL EELQDTTLSS ILSALMQHCI PPQRRFPLDR GLAPPWWPTG NELWCGDQGL 120 SQEQGPPPYR KPHGLKKAWK VSVLAAIIKH MCPDLGRMRR LVNQSKNLQN KMTAKETSTW 180 SKVVNQEEAL LKLTRSLKIS TSKGEVNKDN EDQLDFTFVP KMLTKDDKRK SIIFDHDLNM 240 EDVVYASQNM NCPQSELGLG FVDKNLRIEH ESSCSYGKVK SDNKITKKVP MTTSLA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 4e-56 | 70 | 192 | 6 | 128 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 4e-56 | 70 | 192 | 6 | 128 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc00g154980.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004253472.3 | 0.0 | putative ETHYLENE INSENSITIVE 3-like 4 protein, partial | ||||
Swissprot | Q9LX16 | 1e-100 | EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein | ||||
TrEMBL | A0A494GA22 | 0.0 | A0A494GA22_SOLLC; Uncharacterized protein | ||||
STRING | Solyc00g154980.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA304 | 23 | 178 | Representative plant | OGRP563 | 16 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10120.1 | 1e-103 | EIL family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc00g154980.1.1 |
Publications ? help Back to Top | |||
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