PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc00g107050.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YC | ||||||||
Protein Properties | Length: 145aa MW: 16857.9 Da PI: 5.732 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 107.1 | 1.1e-33 | 35 | 134 | 2 | 97 |
NF-YC 2 lksfwekq...iekatdfknhel.PlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 +++fw++q +ek +fkn+ l rik+i+k+++dv++i++e+Pvll+kac++fi eltlrswl+a+en+rr lkk d++++++r d Solyc00g107050.1.1 35 MEMFWTDQereMEKIDNFKNNLLvSPNRIKNIMKTNKDVRRITSESPVLLAKACDFFIQELTLRSWLNAQENHRRILKKKDVTDVIKRNDN 125 789***99999********88762568**************************************************************** PP NF-YC 89 fdflvdivp 97 +fl d+ Solyc00g107050.1.1 126 LNFLFDDDV 134 *****9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 9.39E-20 | 53 | 140 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.0E-22 | 61 | 131 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.5E-14 | 61 | 117 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MENNSEKSTV NATQSVDAYS TMSHLNIEKI EQEYMEMFWT DQEREMEKID NFKNNLLVSP 60 NRIKNIMKTN KDVRRITSES PVLLAKACDF FIQELTLRSW LNAQENHRRI LKKKDVTDVI 120 KRNDNLNFLF DDDVNSTGGN NGHT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-23 | 42 | 131 | 3 | 91 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc00g107050.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246917 | 0.0 | Solanum lycopersicum chromosome 3 clone HBa0117I12, complete sequence | |||
GenBank | AC246984 | 0.0 | Solanum lycopersicum chromosome 3 clone HBa0117I12, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025884653.1 | 1e-103 | nuclear transcription factor Y subunit C-4-like | ||||
Swissprot | Q9FMV5 | 3e-31 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A494G9T4 | 1e-101 | A0A494G9T4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc00g107050.1.1 | 1e-102 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12872 | 5 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 4e-30 | nuclear factor Y, subunit C4 |
Link Out ? help Back to Top | |
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Phytozome | Solyc00g107050.1.1 |