PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc00g057280.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 161aa MW: 18551.4 Da PI: 6.7569 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.4 | 1.1e-17 | 21 | 112 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffkv++ + ++ l++p kfa++ ++ ++++++led+ gr+W ++ +++ g+ +++GW +F +++Lk+gDf+vF+++ ++ + Solyc00g057280.1.1 21 FFKVMII--ETFLQVLCFPPKFARSVSYL--TDREISLEDSYGRQWMATV--CNYNGSLAIRQGWDKFSGEHDLKVGDFLVFHYVP-DDLN 104 6666633..34445699*********877..4568***************..*******************************986.6666 PP .EEEEE-S CS B3 92 lvvkvfrk 99 + v++f++ Solyc00g057280.1.1 105 FIVQIFET 112 79999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-21 | 16 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.253 | 19 | 113 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.88E-18 | 20 | 110 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-19 | 20 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.0E-9 | 21 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-15 | 21 | 112 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MKACYDNDDG SLIYGKKIIS FFKVMIIETF LQVLCFPPKF ARSVSYLTDR EISLEDSYGR 60 QWMATVCNYN GSLAIRQGWD KFSGEHDLKV GDFLVFHYVP DDLNFIVQIF ETTGCEKIKF 120 SCNIGKEKPK EKTYQEITTI EESQSGKLLV HKNFRVILFL * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc00g057280.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015159850.1 | 2e-69 | PREDICTED: B3 domain-containing protein Os02g0598200-like | ||||
TrEMBL | A0A494G9H1 | 1e-115 | A0A494G9H1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc00g057280.1.1 | 1e-116 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2210 | 23 | 52 | Representative plant | OGRP8972 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 6e-11 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc00g057280.1.1 |