PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc00g012700.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 241aa MW: 27094.2 Da PI: 10.3016

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc00g012700.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28.4	5.5e-09	92	169	7	90
FAR1 7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 A+++GF++++++s+ + ++vC ++g+++ kk+ ++ ++ + ++gC ++ ++k +++w ++ l+ HnH++ Solyc00g012700.1.1 92 ANKAGFTIVTQRSSLI-----NPMFRLVCERSGTHKVPKKN--PKHARTGSRKCGCLFMISGYQSKqTKEWGLNILNGVHNHPME 169 8999999999876665.....34889*********9999..888889999****8766666*************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-6	92	169	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MATTAIMVEN AEDVPGETKQ NFVENSGDVK PPKVEAKPNI DGAFVNVEAS KYVAGSGVLP 60 LQAHEVDTAR FFSDDVKSKD RDELLEWVRR QANKAGFTIV TQRSSLINPM FRLVCERSGT 120 HKVPKKNPKH ARTGSRKCGC LFMISGYQSK QTKEWGLNIL NGVHNHPMEP ALEGHIHSGR 180 LKEDDKKIVR DLIKSKMLSR NILIHLKNQR PHCMTNVKQV YMNVNKYGRQ IGVTRSRCNF 240 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc00g012700.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A494G8Q3	1e-176	A0A494G8Q3_SOLLC; Uncharacterized protein
STRING	Solyc00g012700.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA25647	2	2

Link Out ? help Back to Top
Phytozome	Solyc00g012700.1.1