PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc00g011660.1.1
Common NameLOC101262388
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 311aa    MW: 35535.2 Da    PI: 4.3881
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc00g011660.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.71.5e-1138963698
                        EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                        + le ++g+ Wev++  ++++g+++l+kGW++F++   +  + +++F+++ r +f   v +++
  Solyc00g011660.1.1 38 VFLEAPHGKAWEVEV--ENSQGQIWLAKGWSDFCDYYSISIKSVLMFTYNPRCQF--SVAIYD 96
                        77999**********..********************************988888..777776 PP
2B345.51.4e-142202921087
                         HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +++++ + +p +fa++ ++++ +   ++l +e+g +W+v++  +  ++++++++GW  F k+n++  g+++ Fkl++ 
  Solyc00g011660.1.1 220 SHATC-MAIPLRFAQQTDIINMK--NMRLVNEEGVEWKVEI--EYARSMVIIKEGWTAFRKDNKIANGETCRFKLIRG 292
                         34445.99******999888554..7***************..888899*************************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.22E-131397IPR015300DNA-binding pseudobarrel domain
CDDcd100171.18E-81896No hitNo description
SMARTSM010190.0562098IPR003340B3 DNA binding domain
PfamPF023621.7E-83896IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-123898IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.3063898IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-16208298IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-16208298IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.561210304IPR003340B3 DNA binding domain
CDDcd100173.69E-11211293No hitNo description
SMARTSM010194.5E-7213306IPR003340B3 DNA binding domain
PfamPF023623.7E-12222291IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MANEFHGSSL RSSSPNNPKF IQIITSLDEL RRLMLNPVFL EAPHGKAWEV EVENSQGQIW  60
LAKGWSDFCD YYSISIKSVL MFTYNPRCQF SVAIYDQSKT EIEYPIDQDI ESDEQEEDIL  120
FAQANANIIE EDILILQSNA NVIEEDIPIL QSNTNEIEDE EEHIPVNCPQ TNANLIEQHK  180
EVREANSISE KVGPNNYSSR YSLVDLTGDN PFFEMVIKKS HATCMAIPLR FAQQTDIINM  240
KNMRLVNEEG VEWKVEIEYA RSMVIIKEGW TAFRKDNKIA NGETCRFKLI RGPIANVLQV  300
QKIPTPLCLQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc00g011660.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384760.0Solanum lycopersicum chromosome 3 clone C03SLm0006J07, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234716.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A494GAC90.0A0A494GAC9_SOLLC; Uncharacterized protein
STRINGSolyc00g011660.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7499524
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-11B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]