PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.J029600.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

HRT-like

Protein Properties

Length: 424aa MW: 46233 Da PI: 8.7264

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.J029600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	56.5	4.7e-18	158	187	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv ledGs C ++Pv+gRKRC HKG+Ri Seita.J029600.1.p 158 CGVVLEDGSSCLEHPVEGRKRCSLHKGRRI 187 *****************************7 PP
2	HRT-like	54	2.8e-17	385	414	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG+++ dGs+C+++Pv+gRKRC+ HKG+R Seita.J029600.1.p 385 ICGARTADGSPCMNKPVEGRKRCALHKGQR 414 8****************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MDNKQEAEKT EAQLLRVFDY AWNKLQNGAC RREEILLKLE QGATSRRSSL LSRVRHLKQD 60 IFGVKAGIKI KGSGSVNTPP GIMKSMLPRV RTFVGFRPQP VNSEDSGGEA TDIPWKKISG 120 IPCGNRQAHR RRSGGHRIKK VDVAKRRTVP IQDSNSFCGV VLEDGSSCLE HPVEGRKRCS 180 LHKGRRIKGS PKCSSTSYPC QAEIPIPYVT EDLDNSDQTR EIIESIPRLT EDLDSSDQTQ 240 ESKISPKNIS KTVEESPRQS NNIKAEEVKT REAPTEDGTH DASRDACICD CEEKASHAEP 300 ESQEPQPSGR MWFELLKARK KLASADSSRG SGSQTRDYAA PICGAMADNG SSKMVPNAGR 360 EICEKDSGIE VAGASFSISS GWPGICGART ADGSPCMNKP VEGRKRCALH KGQRASCTPT 420 PSV*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MDNKQEAEKT EAQLLRVFDY AWNKLQNGAC RREEILLKLE QGATSRRSSL LSRVRHLKQD  60
IFGVKAGIKI KGSGSVNTPP GIMKSMLPRV RTFVGFRPQP VNSEDSGGEA TDIPWKKISG  120
IPCGNRQAHR RRSGGHRIKK VDVAKRRTVP IQDSNSFCGV VLEDGSSCLE HPVEGRKRCS  180
LHKGRRIKGS PKCSSTSYPC QAEIPIPYVT EDLDNSDQTR EIIESIPRLT EDLDSSDQTQ  240
ESKISPKNIS KTVEESPRQS NNIKAEEVKT REAPTEDGTH DASRDACICD CEEKASHAEP  300
ESQEPQPSGR MWFELLKARK KLASADSSRG SGSQTRDYAA PICGAMADNG SSKMVPNAGR  360
EICEKDSGIE VAGASFSISS GWPGICGART ADGSPCMNKP VEGRKRCALH KGQRASCTPT  420
PSV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.J029600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004987414.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A368PEZ6	0.0	A0A368PEZ6_SETIT; Uncharacterized protein
STRING	Si029353m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7948	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	3e-14	effector of transcription2

Link Out ? help Back to Top
Phytozome	Seita.J029600.1.p