PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G554100.1.p
Common NameLOC101765829, SETIT_038598mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 295aa    MW: 31338.8 Da    PI: 5.8539
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G554100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.26.2e-08167210755
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         ++ r+RR+ri ++ +eL +l+P         K++ ae+Le A +++k Lq
  Seita.9G554100.1.p 167 AAARQRRKRISEKTAELSRLIPGgH------KMNTAEMLEAAARHVKLLQ 210
                         677*******************955......****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.659160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-9165216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-11165218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-9166213No hitNo description
PfamPF000102.2E-5167210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MALSFHPTTA PLFGHLPAAD MSFLQDPEVT DALLGFVYDP LDPANAALDD LLNLPLHDDD  60
DAAFLGPLHD DSDGEVKQHC AKKQRACGDG AWRGLADIDA TGQLCNSGGN QQVPALPELL  120
NEFVLPLPPP SPPPLPPAAQ LPAPGSFVRA AEAKKAAGNV SQSLQSAAAR QRRKRISEKT  180
AELSRLIPGG HKMNTAEMLE AAARHVKLLQ AQVGMLALMR TVGSTENEKM PSVAQEQMHK  240
LLVRGDVQER LAAEGKCLVP RKLVDAVAKD NSVMSNALVN RELGWFVASL PAGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G554100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661333.10.0uncharacterized protein LOC101765829
TrEMBLK4AI890.0K4AI89_SETIT; Uncharacterized protein
STRINGSi038598m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.13e-23bHLH family protein