PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G538300.1.p | ||||||||
Common Name | LOC101785924, SETIT_033886mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 1508aa MW: 165851 Da PI: 6.1434 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00042 | 1397 | 1422 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C C+++F ++ +L+ H r+ + Seita.9G538300.1.p 1397 FQCDidLCDMTFETRAELNAHKRNiC 1422 899999****************9877 PP | |||||||
2 | zf-C2H2 | 12.5 | 0.00046 | 1422 | 1444 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+Fs++ +LkrH+ +H Seita.9G538300.1.p 1422 CTdeSCGKRFSSHKYLKRHQCVH 1444 77778***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00545 | 4.5E-12 | 26 | 67 | IPR003349 | JmjN domain |
PROSITE profile | PS51183 | 13.481 | 27 | 68 | IPR003349 | JmjN domain |
Pfam | PF02375 | 4.4E-13 | 28 | 61 | IPR003349 | JmjN domain |
PROSITE profile | PS51184 | 34.782 | 221 | 390 | IPR003347 | JmjC domain |
SMART | SM00558 | 3.0E-47 | 221 | 390 | IPR003347 | JmjC domain |
SuperFamily | SSF51197 | 6.32E-27 | 227 | 386 | No hit | No description |
Pfam | PF02373 | 2.1E-36 | 254 | 373 | IPR003347 | JmjC domain |
SMART | SM00355 | 34 | 1397 | 1419 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.923 | 1420 | 1449 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.3 | 1420 | 1444 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1422 | 1444 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.7E-6 | 1426 | 1450 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.63E-10 | 1436 | 1478 | No hit | No description |
PROSITE profile | PS50157 | 12.071 | 1450 | 1479 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.001 | 1450 | 1474 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.1E-10 | 1451 | 1474 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 1452 | 1474 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.11E-9 | 1468 | 1503 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.0E-10 | 1475 | 1502 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.157 | 1480 | 1507 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.79 | 1480 | 1506 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1482 | 1506 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0033169 | Biological Process | histone H3-K9 demethylation | ||||
GO:0045814 | Biological Process | negative regulation of gene expression, epigenetic | ||||
GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0032452 | Molecular Function | histone demethylase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1508 aa Download sequence Send to blast |
MSPPPAVEAG GPGETPVPAW LRGLPRAPEY RPTESEFADP IAFLSRVERE AAAYGICKVI 60 PPYPRPSRRF VFAHLNRSLT SSSDAANPAL SGSSSSTAPS RPESAAVFTT RHQELGTPRR 120 GRPPPQVLKQ VWQSGEQYTL EQFEAKSRAF SKIHLAGLRE PTPLEVESLF WKVSADRPIY 180 IEYANDVPGS GFAAPPQSRH RKKRRREGDQ VEEGEKGSGW RLSGSPWNLQ AIARAPGSLT 240 RFMPDDVPGV TSPMVYIGML FSWFAWHVED HELHSLNFLH TGAPKTWYAV PGDRASELEE 300 VIRVHGYGGN PDRLASLAVL GEKTTLMSPD VLVARGVPCC RLVQYPGEFV VTFPRAYHIG 360 FSHGFNCGEA ANFATPQWLK FAKDAAVRRA VMNYLPMLSH QQLLYLLAVS FITRTPSVLS 420 GIRTSRLRDR RKEERELLVK QEFLQDMINE NKLLCSFLKK KSIDNVVLWE PDLLPSSTVL 480 NSCSSGSKAP EKKSEDGCRI ESSQCNHKDN SSPDGSALMT GAQTKCTSAN SKSSDAASAS 540 VEKSDADIDD EDDLPFDLSI DSGSLTCVAC GILGYPFMAI LQPSKEALEG ISPVHRERST 600 LSFEKEKNSN VFPCCPAGGN FGSSFVPNRT SCSVEQSCLA TPAEQTNIDP QNVNSHKDIS 660 LTENELAGPV QQHSDSSHSC RSENTLHSCS NREKSDNTIP KDSLGPEVKQ TGRGDIDVQA 720 VESCDGTISW NTSSTFARPR IFCLQHALEI EELLEGKGGV RALIICHSDY IKLKALAISI 780 AEEIEFQFDC TDVPLANASK SDLHLINISI DDEGHEEDGR DWTSQMGLNL KYCAKLRKET 840 SGIRDQSPLS VWELFSNPSP VSVVPNLKWL CRKARTPYKV IGIITSSGTS ATAEEVKPEV 900 KKETCTTGNV HEDDSRQHIS QQSGLVQPSG LHDSDDRENK SSCSEENDHD RHCLIDIPIA 960 VAEYPMKHQV CEGAVGVSTC NDTICSSDSQ DSSPLATSPV DVTRYQGCIQ STELSSSSTF 1020 SVRQFLNDES TSVEGSMNCM SNHEYLQSQD VTLQCRDECL QVQQDQEEMR LCNSSNRTSV 1080 DPCLKEDLVI SEEKHGSNVS AALENEHDCA KTSKCSYKTN ESAAVNQLKT HDAGAVPEKQ 1140 KSSCDEMTCG SADVQCSITF GCLGSADVPG STQPQSVPHD LMSDELQVDS HHCVVKAVEL 1200 KSNNSAKHES PQIDNLILED AQAAATTAIP GHDGKSVHAG SNSFDILLGA LAEESKVTDA 1260 PGKDEVGKAS LTLMTLASND HSADEIAEGK VVEVAKTNTI FGATKDDEQV DRPHDFHLSD 1320 VVSRSIGNSN RTEIICYVRR KHKRKKDSQS NTDSSQSLGN FIRSPCESLR PRTKPAVVET 1380 IEVSAGKKGK RAKVVLFQCD IDLCDMTFET RAELNAHKRN ICTDESCGKR FSSHKYLKRH 1440 QCVHSDKRPF KCPWDGCEMT FKWLWAQTEH VRVHTGERPY KCSAPSCGQT FRYVSDYSRH 1500 RKKFNHY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ip0_A | 3e-74 | 14 | 426 | 2 | 376 | Transcription factor jumonji (Jmj) family protein |
6ip4_A | 3e-74 | 14 | 426 | 2 | 376 | Arabidopsis JMJ13 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1338 | 1344 | RRKHKRK |
2 | 1339 | 1346 | RKHKRKKD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G538300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985676.1 | 0.0 | lysine-specific demethylase SE14 | ||||
Swissprot | Q10RP4 | 0.0 | SE14_ORYSJ; Lysine-specific demethylase SE14 | ||||
TrEMBL | K4A4T2 | 0.0 | K4A4T2_SETIT; Uncharacterized protein | ||||
STRING | Si033886m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9939 | 34 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 1e-180 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G538300.1.p |
Entrez Gene | 101785924 |