PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G536000.1.p | ||||||||
Common Name | LOC101777578, SETIT_035742mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 441aa MW: 49489 Da PI: 10.0285 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.6 | 1.2e-07 | 132 | 174 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W+ eE ++l ++++++ + + Ia +++++R+ +++ksr+++ Seita.9G536000.1.p 132 AWSREETDQLFELCERFDLR-FIVIADRFPTTRSVEDLKSRYYS 174 7*******************.*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16282 | 6.7E-31 | 105 | 179 | IPR032563 | DAMP1, SANT/Myb-like domain |
SMART | SM00717 | 3.0E-7 | 129 | 178 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.67E-6 | 129 | 183 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.9E-5 | 132 | 177 | IPR009057 | Homeodomain-like |
CDD | cd11658 | 7.92E-18 | 133 | 175 | No hit | No description |
Pfam | PF05499 | 6.8E-7 | 311 | 374 | IPR008468 | DNA methyltransferase 1-associated 1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0000812 | Cellular Component | Swr1 complex | ||||
GO:0035267 | Cellular Component | NuA4 histone acetyltransferase complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MDAKDILGLP KTPFSTSQEK KSRPPKEPQR KPDGVSREVY ALTGGVGMAP LMPTIEASHL 60 KRRPAAEKEK VAWQWLPFTS SARSDNLQLY HWVRVVNGVP PTGDYQFAKY NKKVDVLKYT 120 DEEYEKYLID PAWSREETDQ LFELCERFDL RFIVIADRFP TTRSVEDLKS RYYSVSRSLL 180 IHRARSFDDV SGNPLVKDSY DAAHETERKR ALSALLSQTK QQERKDAETL AEAKRIMESR 240 AASKNLDEAG MPSSSDNAMV PVDGVSPLSG THPPLTHPNT AANSSIPNSL RTLRVYLRTH 300 ALDQMVQAAS ASAGLRVIKR VDQTLQDLGV NLKPKVPTKA VCVEHLELRN EILTLLNLQK 360 QLQNKEAEVS ANRESSFTEA PSTPKRSNRD IDRTFIPDTI GFSGERAGKR DHKRKTTGRF 420 IDAPPSPTQS KRPRKLKGSD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3hm5_A | 4e-20 | 104 | 179 | 4 | 83 | DNA methyltransferase 1-associated protein 1 |
4iej_A | 4e-20 | 104 | 179 | 4 | 83 | DNA methyltransferase 1-associated protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G536000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968439 | 0.0 | EU968439.1 Zea mays clone 320860 DNA methyltransferase 1-associated protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985656.1 | 0.0 | SWR1-complex protein 4 | ||||
Swissprot | Q8VZL6 | 0.0 | SWC4_ARATH; SWR1-complex protein 4 | ||||
TrEMBL | K4AA36 | 0.0 | K4AA36_SETIT; Uncharacterized protein | ||||
STRING | Si035742m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6153 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47210.1 | 0.0 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G536000.1.p |
Entrez Gene | 101777578 |
Publications ? help Back to Top | |||
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