PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G531900.1.p
Common NameLOC101758111, SETIT_038907mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 385aa    MW: 43215.8 Da    PI: 5.8867
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G531900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.32e-32501402101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+++++ d+++++++sw + gnsfvv+d++ fa  +Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+++
  Seita.9G531900.1.p  50 FLTKTFDLVADPATDQVVSWGRAGNSFVVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLRGQRQ 131
                         9****************************************************************999.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll+ ikr++
  Seita.9G531900.1.p 132 LLRLIKRRR 140
                         *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.4E-3446139IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.2E-5946139IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.9E-3746139IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.4E-3050139IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-185073IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-1888100IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434089113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-18101113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDHPLLPGMV TVKEEWPPGS PPPEEEVEDM DAEGAPRPME GLHEVGPPPF LTKTFDLVAD  60
PATDQVVSWG RAGNSFVVWD PHVFAAVLLP RFFKHNNFSS FVRQLNTYGF RKIDPDRWEF  120
ANEGFLRGQR QLLRLIKRRR PPSYLPGSQQ QQQQQAAQLG TCLEVGQFGG LDEEIDRLKR  180
DKNILLAEVV KLRQEQQSTR ADMAAMEARL QHAEHKQVQM MGFLARAMQS PDFFQQLLQH  240
QDRRKELEDA VSRKRRRPID AAPSLAGGEA SGCPRHQDEL LFRPGGFEVL GSGEPGTSEL  300
ENLALNIQGL GKRKQDEKEA QGGLAAELTD DFWEELLSEG MRGGHAWTAV PLVPTDMERR  360
QRPPGRYVDA LAQRISSMSN STAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-254813918120Heat shock factor protein 1
5d5u_B2e-254813927129Heat shock factor protein 1
5d5v_B2e-254813927129Heat shock factor protein 1
5d5v_D2e-254813927129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133138RLIKRR
2242256RRKELEDAVSRKRRR
3252256RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G531900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0556311e-122BT055631.1 Zea mays full-length cDNA clone ZM_BFc0084J01 mRNA, complete cds.
GenBankJX4285381e-122JX428538.1 Zea mays subsp. mays clone pUT3138 HSF13 HSF type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985605.10.0heat stress transcription factor A-2d
SwissprotQ8H7Y61e-172HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLK4AJ430.0K4AJ43_SETIT; Uncharacterized protein
STRINGSi038907m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-94heat shock transcription factor A6B