PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G528900.1.p
Common NameLOC101786196, SETIT_034965mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TALE
Protein Properties Length: 562aa    MW: 60559.1 Da    PI: 6.4372
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G528900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.31.3e-083423791954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +e+  LA+++gL+  qV++WF N R +
  Seita.9G528900.1.p 342 FEHflHPYPKDSEKLMLARQTGLSRGQVSNWFINARVR 379
                         554459******************************88 PP
2BELL1101.4e-35204275172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         erq+lq+k + L+ ll++Vd++Y++y++q+q+v+ssF+avag g+a+pYt+lAl++iSrhFr+L+dai  q+
  Seita.9G528900.1.p 204 ERQDLQNKVSALMALLDQVDRKYRHYHHQMQIVMSSFDAVAGAGAARPYTALALQTISRHFRSLRDAIGAQV 275
                         799*****************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.4E-48134273IPR006563POX domain
PfamPF075265.0E-48140271IPR006563POX domain
PROSITE profilePS5007112.001320383IPR001356Homeobox domain
SMARTSM003891.7E-9323387IPR001356Homeobox domain
CDDcd000862.99E-12323384No hitNo description
SuperFamilySSF466894.28E-17324390IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27326389IPR009057Homeodomain-like
PfamPF059204.3E-17340379IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MATFFSASAD QRDLAAAGDM FHHYTTSNPY SDSPTGGLMP FPATIVSEGH VAHCGDGRDE  60
PASFVNARDG PTSGAGMGLQ TQLLMANAST AQHQGLSLSL GTQGVPVSLY QYRQAGMAAA  120
SLLSPGQTTT ASRSAQSIYI QNSKYLKAAR ELLDEVVNVR DAIKRKGDKN QSNKDSGEGK  180
DAEKSEEKAE EHEGNSSAEL TPSERQDLQN KVSALMALLD QVDRKYRHYH HQMQIVMSSF  240
DAVAGAGAAR PYTALALQTI SRHFRSLRDA IGAQVQSLRR SLGEKDTSAQ GGGLSRLRYI  300
DQQLRQQRAM QQFGMMQQPQ HAWRPQRGLP ESAVSVLRAW LFEHFLHPYP KDSEKLMLAR  360
QTGLSRGQVS NWFINARVRL WKPMIEEMYK EEFGAEMDSH SSSENAGNKG KDEAISSEDH  420
DEFQSPSSAA KHGTAAGHLN AFKSEAIGGM DAGGAIGSYT TSLNLGAVGN GSSSSSLLQD  480
ALAHHHSDPR FVAYGDMVGL GGYDGGSVSL TLGLQHCNDA GAVPAEQPGL LYGNAGDFEF  540
MNASEDRQRF GSSQLLHDFV A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-17329386158Homeobox protein Meis1
4xrs_B2e-17329386158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G528900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284970.0KJ728497.1 Zea mays clone pUT6802 HB transcription factor (HB64) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985591.10.0BEL1-like homeodomain protein 7
RefseqXP_004985592.10.0BEL1-like homeodomain protein 7
RefseqXP_004985593.10.0BEL1-like homeodomain protein 7
RefseqXP_004985594.10.0BEL1-like homeodomain protein 7
SwissprotQ9SIW11e-126BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLK4A7V40.0K4A7V4_SETIT; Uncharacterized protein
STRINGSi034960m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-111BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]