PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G525000.1.p | ||||||||
Common Name | LOC101771358, SETIT_035812mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Dof | ||||||||
Protein Properties | Length: 429aa MW: 45699.3 Da PI: 8.2738 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.4 | 8.7e-40 | 98 | 158 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s Seita.9G525000.1.p 98 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSAS 158 7899*****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-31 | 94 | 155 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.7E-32 | 100 | 156 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.929 | 102 | 156 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 104 | 140 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MAECRVGGGG GDGLIKLFGK TIPVPEAAAA VGEADKDIQQ SGSSTTELKG QENTLQDSTG 60 SPPQQEVADT EDSSATKKSS GDQQQGETTN QKEKLKKPDK ILPCPRCNSM DTKFCYYNNY 120 NINQPRHFCK NCQRYWTAGG AMRNVPVGAG RRKSKSASAT SHFLQRVRAA LPIDALCAAA 180 KTNGTVLSFG SDMSSLDLTE QMKHLKEKLV PITRIKSSDD RSAGSCTEGS AKVEDSNQKE 240 KVTADKSANV VPHPCMNGVT MWPFSCAPPP ACYTSGIAIP FYPAAAAYWG CMVPGAWNTP 300 WPPHSQSESA SPLSTASPAS TKSNCFTPGK RSRDCDEEGD TKGHGKVWVP KTIRIDDADE 360 VARSSILSLI GINGDKAGKD GRGCKLAKVF EQQKEEAKTA THAVINSLPF LQGNPAALSR 420 SLTFQEGS* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00046 | PBM | Transfer from AT5G39660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G525000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC169375 | 0.0 | AC169375.4 Sorghum bicolor clone SB_BBc0020O07, complete sequence. | |||
GenBank | HQ540086 | 0.0 | HQ540086.1 Sorghum bicolor clone SbDof23 Dof-type zinc finger protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985552.1 | 0.0 | cyclic dof factor 1 | ||||
TrEMBL | K4AAA5 | 0.0 | K4AAA5_SETIT; Uncharacterized protein | ||||
STRING | Si035812m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2099 | 37 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 3e-59 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G525000.1.p |
Entrez Gene | 101771358 |