PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G516800.2.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 365aa    MW: 40800.7 Da    PI: 9.1305
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G516800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.6e-17189239155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++y+GVr+++ +grW+AeIrdp+    + +r +lg++ taeeAa+a+++ +++++g
  Seita.9G516800.2.p 189 KKYRGVRYRR-SGRWAAEIRDPR----QgRRAWLGTYCTAEEAARAYDREARRIRG 239
                         59******99.7*********94....25************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.39E-26189248No hitNo description
SuperFamilySSF541711.44E-20190248IPR016177DNA-binding domain
PROSITE profilePS5103222.221190247IPR001471AP2/ERF domain
SMARTSM003803.4E-33190253IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-28190247IPR001471AP2/ERF domain
PfamPF008473.3E-10190239IPR001471AP2/ERF domain
PRINTSPR003674.9E-7191202IPR001471AP2/ERF domain
PRINTSPR003674.9E-7213229IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MASWAEKSPW YRTGAQNFFY IEVDRCRWIK RRKNSNGDDD ARGLPRSSTA HAIRFLYLQF  60
PRARFSLHGR SPAFASFQHP DDMCGGAILA ELIPARVHRP LTVATLWPAA AADGRTTTAG  120
RKRKASDVDE SEAATDDEFE AEFRLFEEDE EPSPAASPEA VGGRRSRTAP SPAVSGAAVS  180
TSPGPSSHKK YRGVRYRRSG RWAAEIRDPR QGRRAWLGTY CTAEEAARAY DREARRIRGK  240
SARLNFPIPH EDLPRRRTPV AIDLNVAAVS DDLDTVDVDG DAGDIRHEEM GGEAVRRTIA  300
WIKELITQGP QDERIVPELK MNGALRYAAL IAECSRQMEE IAALRRDLET HERQLVRLVS  360
NVLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-151862471072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G516800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370711e-70BT037071.1 Zea mays full-length cDNA clone ZM_BFb0153L12 mRNA, complete cds.
GenBankKJ7275481e-70KJ727548.1 Zea mays clone pUT5408 AP2-EREBP transcription factor (EREB179) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985472.10.0ethylene-responsive transcription factor RAP2-12
TrEMBLA0A368SV320.0A0A368SV32_SETIT; Uncharacterized protein
STRINGSi036647m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.15e-12ethylene-responsive element binding protein