PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G516700.1.p
Common NameLOC101773791, SETIT_036615mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 327aa    MW: 35143.8 Da    PI: 6.0927
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G516700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-1999148255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +++G+r+++ +g+W+AeIrdp     + +r++lg+f+tae+Aa+a++  +++l+g
  Seita.9G516700.1.p  99 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFDTAEDAARAYDVEARRLRG 148
                         69*******.**********72....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.6E-3298156IPR001471AP2/ERF domain
SMARTSM003804.5E-3699162IPR001471AP2/ERF domain
PROSITE profilePS5103223.6799156IPR001471AP2/ERF domain
PfamPF008471.3E-1199148IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-2299157IPR016177DNA-binding domain
CDDcd000181.37E-2999158No hitNo description
PRINTSPR003671.3E-11100111IPR001471AP2/ERF domain
PRINTSPR003671.3E-11122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MCGGAILTEL IPSPRRAASK PVTAGHLWSA GSNSKKAGNG SDKGHHHADI DDFEAAFEDF  60
DDEFDEEVED HHFVFSAKSA FSPAHGGRAA SQKKRGRRHF RGIRQRPWGK WAAEIRDPHK  120
GTRVWLGTFD TAEDAARAYD VEARRLRGSK AKVNFPAAGA RPRRRGNPRA APKPQHHHAA  180
AAEQPALLAG EKKQEEIAVK PEITVSFDVD GFFNMTFPAF PAAPLAMESS FTGSTEPESG  240
SPAKKPRYDN ESSGGMSSGG GSTLELADEL AFDPFTLLQL PYSGGYESLD GLFAVDAAQD  300
VNGVNNGMDG VSLWSFDDFP ADSAVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2298156463ATERF1
3gcc_A2e-2298156463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19197QKKRGRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G516700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0393001e-122BT039300.1 Zea mays full-length cDNA clone ZM_BFc0004M21 mRNA, complete cds.
GenBankEU9702441e-122EU970244.1 Zea mays clone 342610 root abundant factor mRNA, complete cds.
GenBankKJ7269381e-122KJ726938.1 Zea mays clone pUT3484 AP2-EREBP transcription factor (EREB180) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985469.10.0ethylene-responsive transcription factor RAP2-3
RefseqXP_004985470.10.0ethylene-responsive transcription factor RAP2-3
RefseqXP_004985471.10.0ethylene-responsive transcription factor RAP2-3
TrEMBLK4ACK80.0K4ACK8_SETIT; Uncharacterized protein
STRINGSi036606m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.28e-24ERF family protein