PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G511700.1.p | ||||||||
Common Name | LOC101785922, SETIT_036568mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 331aa MW: 35503.7 Da PI: 6.5171 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.5 | 2.7e-14 | 113 | 164 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++ + + a+i+ A++Y+++L+ Seita.9G511700.1.p 113 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAHRGDQASIVGGAINYVRELE 164 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.05E-14 | 111 | 168 | No hit | No description |
SuperFamily | SSF47459 | 2.62E-17 | 112 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.904 | 112 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.5E-14 | 112 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-11 | 113 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.1E-11 | 118 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MALEAVVFSQ AAAGHFGYGG RGDSPYWCDL GGLGDLCPGD YSWDQELDAW AAAPAVGDDW 60 EAASRADQSS DASTDQLLQG KKAASEPAAA VAAVRRKRRR AKVVKNKEEI ETQRMTHIAV 120 ERNRRRQMNE YLAVLRSLMP PSYAHRGDQA SIVGGAINYV RELEQLLQSL EVQKSIKNNR 180 GRSSTDAAGN SSPFAGFFSF PQYSTSPAHG GGCSSTSLGS SSNTSSSNAT TNSDASVADI 240 EVTMVEGHAS LKVLARRRPK QLLKLVTGLH QLRIPPLHLN MTTTADAMVL YTFSLKVEDG 300 SKMGSVEDIA TAVHEILGSI QQQEEETAVM * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 99 | RKRRR |
2 | 113 | 124 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G511700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042030 | 1e-107 | BT042030.1 Zea mays full-length cDNA clone ZM_BFb0114I01 mRNA, complete cds. | |||
GenBank | EU961397 | 1e-107 | EU961397.1 Zea mays clone 235094 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985409.1 | 0.0 | transcription factor bHLH94 | ||||
TrEMBL | K4ACG1 | 0.0 | K4ACG1_SETIT; Uncharacterized protein | ||||
STRING | Si036568m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP741 | 38 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 4e-70 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G511700.1.p |
Entrez Gene | 101785922 |