PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G484800.1.p
Common NameLOC101754078, SETIT_035840mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 424aa    MW: 46892.5 Da    PI: 4.8874
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G484800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.23.1e-34511432103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d++++ +isw + g sfv++d++ f++++Lp++Fkh++f+SF+RQLn+YgF+kv+ ++         we++++ F kg+k+
  Seita.9G484800.1.p  51 FLTKVYDMVSDPATDAVISWAAGGGSFVIWDSHAFERDLLPRHFKHNHFTSFIRQLNTYGFHKVDPDR---------WEWANEGFVKGQKH 132
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++ikrkk++
  Seita.9G484800.1.p 133 LLKTIKRKKKS 143
                         ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.6E-5547140IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.45E-3347140IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.4E-3648140IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.0E-175174IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-3051140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-1789101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-17102114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MGSKKRSPQH PASPVAGEVA GDVGAPPPAG KAAPETAPVG VVPRPPDVAP FLTKVYDMVS  60
DPATDAVISW AAGGGSFVIW DSHAFERDLL PRHFKHNHFT SFIRQLNTYG FHKVDPDRWE  120
WANEGFVKGQ KHLLKTIKRK KKSAQDAPSD LQPAPVKTAP GTENIEIGKY GGLEKEVETL  180
KRDKALLMQQ LVDLRQYQQS SSLEVQNLIQ RLRVMEQNQQ QMMALLAIVV QNPNFLNQLV  240
QQQRRSNWWN DDGSRKRRFR ALEQGPVADQ ETSGASAQII QYNPPIPETP NQVISVNGTF  300
SSATAQPVSS PESAVPMDAE TTSNSVDLLA SSGHLFTNTS ALSDWDDMLL GCEIEDILPS  360
EQDFQMGEQQ NGQVEAPLTV DDYTEYTVCQ IPQLEQEQQL QDCQMEAQQS HKNPQYADII  420
SKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-244514414124Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G484800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0337940.0BT033794.1 Zea mays full-length cDNA clone ZM_BFc0163K15 mRNA, complete cds.
GenBankBT0431890.0BT043189.1 Zea mays full-length cDNA clone ZM_BFc0119D19 mRNA, complete cds.
GenBankEU9609090.0EU960909.1 Zea mays clone 229513 heat shock factor protein HSF8 mRNA, complete cds.
GenBankJX4284990.0JX428499.1 Zea mays subsp. mays clone pUT3097 HSF14 HSF type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985150.10.0heat stress transcription factor A-9
SwissprotQ10PR40.0HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLK4AAD30.0K4AAD3_SETIT; Uncharacterized protein
STRINGSi035840m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114943039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.26e-71heat shock factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]