PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G482300.1.p
Common NameLOC101779086, SETIT_039620mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 300aa    MW: 33181.6 Da    PI: 5.0634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G482300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.3e-12132180355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  Seita.9G482300.1.p 132 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 180
                         58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.33E-18127197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-11127184No hitNo description
Gene3DG3DSA:4.10.280.105.4E-18129196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.796129179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9132180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10135185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MMYSPPCTDP EREENLCFAV GTNLLASLEH TMDFDEPIIF PMNNVGMQEG VQLYNSAGDT  60
QLSRNMNTGK CLKGAKRKGS GEDSSSLHSL DETGALLQRK VSMQCADEKA TDAGTNREDY  120
VHVRAKRGQA TNSHSLAERF RREKINERMK LLQDLVPGCN KITGKAMMLD EIINYVQSLQ  180
RQVEFLSMKL SAISPEMNCD FDLQDILCSQ DACAAFPGYS LQMSSVHLNL FRASQQGFLR  240
PEPCGVSPNP ANVHVARPVQ QLLQLPTFPQ RGVNWDEELR TVAPDAFASD VGADSMKVE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G482300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678928.10.0transcription factor bHLH76
TrEMBLA0A368STP40.0A0A368STP4_SETIT; Uncharacterized protein
STRINGSi039620m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45362933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26260.39e-47cryptochrome-interacting basic-helix-loop-helix 5