PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G481800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 279aa MW: 29367 Da PI: 7.9547 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.6 | 4.3e-18 | 116 | 170 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Seita.9G481800.1.p 116 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 170 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125.7 | 2.1e-40 | 116 | 204 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++e +eLr + Seita.9G481800.1.p 116 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENRRLQRELQELR-S 204 69*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.7E-18 | 94 | 173 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.36E-19 | 110 | 173 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.232 | 112 | 172 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.8E-16 | 114 | 176 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.9E-15 | 116 | 170 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.67E-15 | 116 | 173 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 147 | 170 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 8.1E-23 | 172 | 215 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 6.5E-11 | 172 | 205 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MAQEDVHLDD AGLALGLSLG GGGGASDAAR QGTCSRLSRE PRALEPSLTL SMPDEATATG 60 PGGCGGGPSH SVSSLSVAGV KRERVEEADG ERASSTAAAA RACGAGAEDD DDGSTRKKLR 120 LTKEQSALLE DRFKEHSTLN PKQKVALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEF 180 LKRCCESLTE ENRRLQRELQ ELRSLKFAAP PAAATPAAAG AVPAPAPFYM QLPAATLTLC 240 PSCERLGGPA AAAKADPDRP KAAASHHFFN PFTHSAAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 120 | TRKKLRL |
2 | 164 | 172 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G481800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP097788 | 1e-177 | FP097788.1 Phyllostachys edulis cDNA clone: bphylf059k15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985119.1 | 0.0 | homeobox-leucine zipper protein HOX19 isoform X2 | ||||
Swissprot | A2XE76 | 1e-110 | HOX19_ORYSI; Homeobox-leucine zipper protein HOX19 | ||||
Swissprot | Q8GRL4 | 1e-110 | HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19 | ||||
TrEMBL | A0A368STQ0 | 0.0 | A0A368STQ0_SETIT; Uncharacterized protein | ||||
STRING | GRMZM2G126808_P02 | 1e-115 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2055 | 36 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-50 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G481800.1.p |