PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G480900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 407aa    MW: 45072.9 Da    PI: 8.9526
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G480900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11229276355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h ++Er+RR+++ + f  L +++P +     +K +K++ L  ++eY+k+L+
  Seita.9G480900.1.p 229 QEHVIAERKRREKMQQQFVALATIVPDL-----TKTDKISLLGSTIEYVKQLE 276
                         5799***********************9.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.967226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9229276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-16230288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14230291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.36E-9231280No hitNo description
SMARTSM003538.3E-12232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MQSCKYLLAP SSSLVTSILG LFCRETQGAR ERLLQNSKAV IHTKTTRPVY KQEKSRKTRS  60
SVDWDSGRRK SGLTYGRKKR RGYIKVMDEL NPWHSHPDPE DELAYMYGQQ EEHAGMQHHF  120
AEPQQYYTPP PPMAPPPNPM HPSHPHRASS SFPGFGVPSL PSLPFGALAV KSEPGQPSSS  180
SSIFSFGGQP PSTLNFSGGD WPDPDGIEAA VQVQQQAPER RSRAHWNTQE HVIAERKRRE  240
KMQQQFVALA TIVPDLTKTD KISLLGSTIE YVKQLEEKVK TLERQNMRRT SEPTVFESKC  300
RISTDSSDAS SSRESTFGAG RFSPTVEASI HGDTILLKIC CKERRGVLVT LISELENQGL  360
SIINTSVLPF TDSCLNITIT AKIGEGFSTT VELVADLTTA LRGFST*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234239ERKRRE
2235240RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G480900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685524.10.0transcription factor NAI1
TrEMBLA0A368STN80.0A0A368STN8_SETIT; Uncharacterized protein
STRINGSi025088m1e-119(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-31bHLH family protein