 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Seita.9G475900.2.p |
| Common Name | LOC101756351, SETIT_036337mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 360aa MW: 39483.7 Da PI: 10.5433 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.9G475900.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 352.2 | 1.1e-107 | 1 | 359 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki...........rernlalsekkaavaerd..................... 57
mdddgs rn+g+ye k nlglqlmss++ +rd+k+ + ++ a +++++ ++++
Seita.9G475900.2.p 1 MDDDGSLGiRNWGFYETV---KGNLGLQLMSSVPpDRDTKPllpnggnflqhHGHHNAPHQHQHQHHTQHphhprgggggsgapsgmptep 88
9*****999******988...************99**************998334444444444443333555666*************** PP
GAGA_bind 58 ....maflqrdkalae.......rnkalverdnkllalllvensla...........salpvgvqvlsgtksidslqqlse.....pqled 121
m+f++++++l+ ++++ ++r+ k+l+ l+v + +++p+g++++ +++ +++lq+++ pq ++
Seita.9G475900.2.p 89 pavhMDFVRNEAWLHPsqhhhqhHHQHQHPRQPKVLHHLPVGPAGHaghpghgghavHHHPTGYGMMADAHGVHTLQMMQPqaqqqPQPQP 179
**************984333222233445666777777777665557889******99*********999999988884333555544444 PP
GAGA_bind 122 save.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvP 211
++++ + +e++ +p+ e +++ k+++ +kkrq++++pk++k kk+kk ++++++ ++++ +r + ++k++++v+ng++lD s++P+P
Seita.9G475900.2.p 180 QPQDpPPPKEESMPQPLIEDHPVLKNEPPVKKRQQGRQPKSPKPKKPKK-VAAPQENGAPNKPAPRPRGPRKTVGMVINGIDLDLSRIPTP 269
45444445566666777777999999999999*****************.66777888877777*************************** PP
GAGA_bind 212 vCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
vCsCtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvtir
Seita.9G475900.2.p 270 VCSCTGTPQQCYRWGAGGWQSACCTTSISTYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLANPIDLKTFWAKHGTNKFVTIR 359
*****************************************************************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 360 aa
Download sequence Send
to blast |
MDDDGSLGIR NWGFYETVKG NLGLQLMSSV PPDRDTKPLL PNGGNFLQHH GHHNAPHQHQ 60
HQHHTQHPHH PRGGGGGSGA PSGMPTEPPA VHMDFVRNEA WLHPSQHHHQ HHHQHQHPRQ 120
PKVLHHLPVG PAGHAGHPGH GGHAVHHHPT GYGMMADAHG VHTLQMMQPQ AQQQPQPQPQ 180
PQDPPPPKEE SMPQPLIEDH PVLKNEPPVK KRQQGRQPKS PKPKKPKKVA APQENGAPNK 240
PAPRPRGPRK TVGMVINGID LDLSRIPTPV CSCTGTPQQC YRWGAGGWQS ACCTTSISTY 300
PLPMSTKRRG ARIAGRKMSQ GAFKKVLEKL AGEGYNLANP IDLKTFWAKH GTNKFVTIR*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
