PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G473800.1.p | ||||||||
Common Name | LOC101782144, SETIT_034363mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 762aa MW: 84405.4 Da PI: 6.2849 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.5 | 7.1e-09 | 51 | 93 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + +a +q G++ +++I ++++ + q++++++ + Seita.9G473800.1.p 51 AWTRQEEENFFNALRQVGKN-FEKITHRVQ-SKNKDQVRHYYYRL 93 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.77E-10 | 43 | 97 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-5 | 46 | 96 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 13.167 | 47 | 98 | IPR017884 | SANT domain |
SMART | SM00717 | 5.1E-7 | 48 | 96 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.93E-7 | 51 | 94 | No hit | No description |
Pfam | PF00249 | 9.4E-7 | 51 | 93 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 762 aa Download sequence Send to blast |
MEKEVHEELN PLLQTIEFAP STSDPNQKLD SAQPSDPNRK PAKKPTRQWA AWTRQEEENF 60 FNALRQVGKN FEKITHRVQS KNKDQVRHYY YRLVRRMKKL LGPGFSLDAK NSKDTIAAML 120 RWWSLLEKFS CSASKLHLKP RRFKTFVEAL GNQLLKDRNK SRRKCPRVDM CVSSPSPIVG 180 KTPGNEAFPL KFLPVDAQNG SRVASPKGAF FKRMAETNSS KSGATKGDLS ATRTVKQKRR 240 AGGVVASAAY KKWERAAMAG VSLVADAAEE LERNTINPGM LCNVDARTLT SSSDKLSTVD 300 GISTNHMKEA DSQAPAKLKL QLFPINEATR KALEKDEHNP HLELTLSSRK KISSVLEHLN 360 RKWGNSNIAS GELILFPYCA HQEDLATYQR WTTRDTVAVA DVFLSVNSPS VFRLRYGWFS 420 LVELEAGVSE ISLTHFENCM MPEDIQVKSP SGDKSCVQKD DALLSSNIHE QYPCSSIDQS 480 ALLHITPSST GKITELPEQT PSQFGSQKQV RVPVTQAFED DQGMNCAAIS EGEWADTLTD 540 ISVGYLLTEA SKGTHLDCIG TSSVKNALLL ENPCSYDSFD AAVALHVSRF QASEQPAHTP 600 HSTIWGGEET CDEFSFNLSA SRKQEGSNTP SSSSPDTDNE VHPLNSEGFQ GFLQDLTGGE 660 AAADNPCNDD GKDREEFCAK SPPRNDDTND LKDQSLADIY WPDSLGPLDL DIPSSRYQAD 720 DLIIGDSQNS WNRMMANSLD AFRNLSFFSS VDKNDSIPSI M* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G473800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728424 | 0.0 | KJ728424.1 Zea mays clone pUT6729 MYB-related transcription factor (MYBR54) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985049.1 | 0.0 | TSL-kinase interacting protein 1 | ||||
TrEMBL | K4A659 | 0.0 | K4A659_SETIT; Uncharacterized protein | ||||
STRING | Si034363m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5478 | 36 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.3 | 1e-178 | TSL-kinase interacting protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G473800.1.p |
Entrez Gene | 101782144 |