PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G469400.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 248aa    MW: 27788.2 Da    PI: 5.1994
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G469400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.23.1e-1358110155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+r+hn+ Er RR+++N+ ++ L +llP a   ++kK+s a ++ ++ +YI +Lq
  Seita.9G469400.1.p  58 RKRNHNAYERDRRKHLNELYSSLHSLLPDA--DHAKKPSIAITVARVLKYIPELQ 110
                         7999*************************6..49999***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-1554124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-1255114No hitNo description
PROSITE profilePS5088813.48457109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1058110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1258125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-863115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDQQVFDGDP FVRSISPPEE DTFSGQLPWP DFDFDDVLYE LSKPAANETS SGGSSSQRKR  60
NHNAYERDRR KHLNELYSSL HSLLPDADHA KKPSIAITVA RVLKYIPELQ KQVENLEVRK  120
KKLMNANCKQ GALNPSGSIA PIVSVNCLNE MEIMVQISFL SNSAEATLPF SVFIEVLENE  180
GLRLISSSTF SPTENRTFYS LHLQRSEAAI SKECPAFCDE LKKAVRSKAA PLQQQYDEYS  240
DPERTLS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250|UniProtKB:Q0JFZ0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G469400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985006.10.0transcription factor bHLH100 isoform X1
SwissprotA2WZ603e-78IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2
TrEMBLA0A368STA40.0A0A368STA4_SETIT; Uncharacterized protein
STRINGSi040099m1e-150(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32803472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04150.17e-25bHLH family protein