PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.9G463800.1.p

Common Name

LOC101778936, SETIT_036121mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Trihelix

Protein Properties

Length: 386aa MW: 42293 Da PI: 6.7964

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G463800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	87.6	1.4e-27	51	120	2	71
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 W ++e+l+Li++rrem+++++++k++k+lWe++s++mre+gf rsp++C++kw+nl k+ykk + +++++ Seita.9G463800.1.p 51 WVREEILCLIALRREMDSHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKWRNLLKEYKKARSHARNN 120 ***************************************************************9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.258	43	107	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.0E-4	44	109	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-5	47	109	IPR001005	SANT/Myb domain
CDD	cd12203	2.49E-28	49	114	No hit	No description
Pfam	PF13837	1.3E-19	50	141	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MLLSGPPPAP TPPLLLPESS GEDGGHDSSS RAAVVATGSA GSAPKRRAET WVREEILCLI 60 ALRREMDSHF NTSKSNKHLW EAISARMREQ GFDRSPTMCT DKWRNLLKEY KKARSHARNN 120 GGGAGGNGNA KMAYYKEIDD LLKRRGKASG SGGCVGSGSV SVNGAGKSPT SNSKIESYLQ 180 FTTDNGFEDA NIPFGPVEAN GRSILSIDDR LEDDRHPLPL TAADAVATNG VNQWNWRDTS 240 TNGGDNQGTF GGRVIFVKWG DYTKRIGIDG TAEAIKEAIK SAFGLRTRRA FWLEDEDEVV 300 RTLDRDMPIG TYTLHLDDGV TIKLCDANRM QTPEDKTFYT EDDFRGFLAR RGWTLLREYG 360 GYRNVESLDD LRSGVIYQGV RSLGD*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MLLSGPPPAP TPPLLLPESS GEDGGHDSSS RAAVVATGSA GSAPKRRAET WVREEILCLI  60
ALRREMDSHF NTSKSNKHLW EAISARMREQ GFDRSPTMCT DKWRNLLKEY KKARSHARNN  120
GGGAGGNGNA KMAYYKEIDD LLKRRGKASG SGGCVGSGSV SVNGAGKSPT SNSKIESYLQ  180
FTTDNGFEDA NIPFGPVEAN GRSILSIDDR LEDDRHPLPL TAADAVATNG VNQWNWRDTS  240
TNGGDNQGTF GGRVIFVKWG DYTKRIGIDG TAEAIKEAIK SAFGLRTRRA FWLEDEDEVV  300
RTLDRDMPIG TYTLHLDDGV TIKLCDANRM QTPEDKTFYT EDDFRGFLAR RGWTLLREYG  360
GYRNVESLDD LRSGVIYQGV RSLGD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	3e-38	45	137	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00640	PBM	Transfer from MDP0000164819	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G463800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984957.1	0.0	trihelix transcription factor GT-1
Swissprot	Q9FX53	1e-142	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	K4AB64	0.0	K4AB64_SETIT; Uncharacterized protein
STRING	Si036121m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5631	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-135	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Seita.9G463800.1.p
Entrez Gene	101778936

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]