PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.9G454200.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 459aa MW: 48502.4 Da PI: 6.1154

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G454200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.9	1.7e-13	249	295	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++++++k+L Seita.9G454200.1.p 249 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 295 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.022	246	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.6E-11	249	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-15	250	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-15	250	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-13	252	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.10E-5	259	298	No hit	No description
CDD	cd04873	2.07E-6	333	417	No hit	No description
Gene3D	G3DSA:3.30.70.260	5.2E-4	333	383	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MTHPIQKLAL EEPSRGIHPP SRFNANVHRS PLLAKLGSNK LLLQIDRSMG GHGGDHHHQE 60 VGVLVDDDED ELEQQARACG GATSGVVEQG VGDGGGGQEA AAGMVFEASS SVGSVSATMA 120 PSQILCWPPP PPAPPQQQLH HHHHHDVGGG GQAPFFPLLP PLPPQPPPPP PFFADFYARR 180 ALQFAYDHQH HSGGASTSSD PLGLGGLYMG HHGGSGMMMP PPFASSPFGD FGRMTAQEIM 240 DAKALAASKS HSEAERRRRE RINAHLARLR SLLPNTTKTD KASLLAEVIQ HVKELKRQTS 300 EITEEACPLP TESDELTVDA SSDEDGRLVV RASLCCDDRA DLLPDLIRAL KALRLRALKA 360 EITTLGGRVK NVLVITGDDS AATGCEGAAA DDDQQEEAPM SPQHTVASIQ EALRAVMERT 420 ASPSAAEEPG SAPSGAGAAG LKRQRTTSLS AILENRSI*

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MTHPIQKLAL EEPSRGIHPP SRFNANVHRS PLLAKLGSNK LLLQIDRSMG GHGGDHHHQE  60
VGVLVDDDED ELEQQARACG GATSGVVEQG VGDGGGGQEA AAGMVFEASS SVGSVSATMA  120
PSQILCWPPP PPAPPQQQLH HHHHHDVGGG GQAPFFPLLP PLPPQPPPPP PFFADFYARR  180
ALQFAYDHQH HSGGASTSSD PLGLGGLYMG HHGGSGMMMP PPFASSPFGD FGRMTAQEIM  240
DAKALAASKS HSEAERRRRE RINAHLARLR SLLPNTTKTD KASLLAEVIQ HVKELKRQTS  300
EITEEACPLP TESDELTVDA SSDEDGRLVV RASLCCDDRA DLLPDLIRAL KALRLRALKA  360
EITTLGGRVK NVLVITGDDS AATGCEGAAA DDDQQEEAPM SPQHTVASIQ EALRAVMERT  420
ASPSAAEEPG SAPSGAGAAG LKRQRTTSLS AILENRSI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	254	259	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G454200.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984717.1	0.0	transcription factor bHLH30
Swissprot	Q9S7Y1	9e-71	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A368SSN3	0.0	A0A368SSN3_SETIT; Uncharacterized protein
STRING	Si039730m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1918	38	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-53	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.9G454200.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]