PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G443300.1.p | ||||||||
Common Name | SETIT_037280mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | LBD | ||||||||
Protein Properties | Length: 242aa MW: 25811.9 Da PI: 7.0997 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.4 | 3.3e-40 | 64 | 163 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf +h++FGasn++kll++lpe r da+ss+vyeAear+rdPvyG++g + +lq+q ++lk Seita.9G443300.1.p 64 PCAACKILRRRCADGCVLAPYFPPAEPAKFTTAHRVFGASNIIKLLQDLPECSRADAVSSMVYEAEARLRDPVYGCAGAVCRLQRQANELK 154 7****************************************************************************************** PP DUF260 92 aelallkee 100 ++la++++ Seita.9G443300.1.p 155 VQLARAQAD 163 ****99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.246 | 63 | 164 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-40 | 64 | 161 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MDRSVMDYGS NASTGTTAAA AQQQQQYNNS CRSASPPSRV SSCSPPPPAA QVVGNAAPTV 60 VLSPCAACKI LRRRCADGCV LAPYFPPAEP AKFTTAHRVF GASNIIKLLQ DLPECSRADA 120 VSSMVYEAEA RLRDPVYGCA GAVCRLQRQA NELKVQLARA QADLLNAQAQ HANLLALVCV 180 DMVNRRDGHH QHQQLQQQPS SPLMDGGSGG GSNFGAAYHQ TFYDSDLDSA TWPDHEAQLW 240 T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-41 | 63 | 165 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-41 | 63 | 165 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G443300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953937 | 1e-139 | EU953937.1 Zea mays clone 1449845 LOB domain protein 11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004987050.2 | 1e-179 | LOB domain-containing protein 1 | ||||
TrEMBL | A0A368SSE3 | 1e-177 | A0A368SSE3_SETIT; Uncharacterized protein | ||||
STRING | Si037280m | 1e-174 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-53 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G443300.1.p |