PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G393900.1.p | ||||||||
Common Name | SETIT_038960mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 239aa MW: 26569.1 Da PI: 5.6784 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.5 | 9.9e-20 | 9 | 55 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+ie++ r+v fskRr+g+ KKA ELS+LC+a va+++fs++g+ + Seita.9G393900.1.p 9 KKIESEEARSVCFSKRRAGMCKKAAELSILCGAMVAIVVFSPSGRPF 55 68*****************************************9855 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.3E-30 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.189 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.89E-26 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.56E-32 | 2 | 71 | No hit | No description |
PRINTS | PR00404 | 1.9E-18 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.4E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-18 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-18 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MGRQKIEMKK IESEEARSVC FSKRRAGMCK KAAELSILCG AMVAIVVFSP SGRPFSFGSP 60 SFKAVYNRFR TLIDPAISGE SCDGSSEETN TTHELLEYSE LEQSIEGEKK RKKRLDETII 120 ERDIDARVMD LLTTEVYSSG LDDLQEFHKK LVAIQDIVKE KIKQVMQEER HPTRPYPPTF 180 IDLVSKYMLD MQIDTHISST TLNSNHTAAD GLDVNGPSTS SVHAVGTSVN YPSNQLDG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 114 | EKKRKKRL |
2 | 108 | 112 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G393900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004986970.1 | 1e-178 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A368SQH0 | 1e-177 | A0A368SQH0_SETIT; Uncharacterized protein | ||||
TrEMBL | K4AJ95 | 1e-177 | K4AJ95_SETIT; Uncharacterized protein | ||||
STRING | Si038960m | 1e-177 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 2e-14 | AGAMOUS-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G393900.1.p |